Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23n18
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.32
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 1.7
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 28 1.7
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 3.0
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 3.0
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 6.9
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 6.9
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 9.2
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 541 IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 627
I+SLC LF+K+ N + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 336 VNNHIHRLNVSGQYLRCQTRNQQ*IGIVHIIR 431
+ H+HRL+++ Q + CQ + I H IR
Sbjct: 55 LRTHLHRLDINVQQIVCQGNKAATVHIAHAIR 86
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 535 DEID--SLCFLFSKYFNQSLIVDGKGLTF 615
DEID SLC L K+F + V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 220 ALKIIANWWATILKCDTMCCVWLSFLLSVIPSITTRRP 107
A+++ NWW + CVW+ +L+ I TT RP
Sbjct: 81 AIELGLNWW------EAWICVWVGYLICGILVATTGRP 112
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +2
Query: 329 FCRQQSHPPFECFWTVFALPNA*STVNWNRSYYKVILNAPCALTDYNTV*GLTRTTASKT 508
FCR + PP F ++ TV W S V P + GL SKT
Sbjct: 326 FCRSRGDPPIVLESIAFESTDS-LTVVWKESTRTVFETVPWRILSSQATNGLIELVRSKT 384
Query: 509 CVLKRN 526
+ +N
Sbjct: 385 RLTSKN 390
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 508 VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTD 684
V FE Q L DE+ + FL + ++ VD T E K + ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189
Query: 685 --NIHNVKK 705
N VK+
Sbjct: 190 LGNDRTVKR 198
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 508 VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 687
+ F R ++SLCFLF NQ D L F N+ ++++ + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -3
Query: 371 SRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAV 276
S + D +VDDK+++ ++TL++M+L++
Sbjct: 606 STTVDDFDSLVDDKSIAAIGILNTLSTMILSL 637
>SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -3
Query: 386 AAQILSRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAVNGLPQSPPRVSSSDLAASSIKNN 207
A+ + SRN Q DVI + S E+ D+ + + P +++ AAS +++
Sbjct: 41 ASSVHSRNPQEEDVIPPKENASREDATDSEAYVRSDWDNTPIPELEKETAEKAASERQHS 100
Query: 206 SKLVGND 186
K+ ND
Sbjct: 101 EKVTIND 107
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/52 (21%), Positives = 24/52 (46%)
Frame = -2
Query: 774 LHNGPKLGALVLMNSSRKNIEKMFFYIVYVVCVVGLILKTTFYGNNTFVKFC 619
+H+GP + + ++ R F+ + Y+V + ++L + G FC
Sbjct: 192 VHSGPSMALRIFLHFLRS----CFYLVQYIVAYIAMLLAMYYNGYVILFLFC 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,842
Number of Sequences: 5004
Number of extensions: 70707
Number of successful extensions: 217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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