Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n18
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0286 + 21945699-21946213,21946255-21947542                       33   0.33 
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    29   5.4  
08_02_0017 - 11264038-11264260,11264376-11264653                       28   7.2  
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353...    28   7.2  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    28   9.5  

>11_06_0286 + 21945699-21946213,21946255-21947542
          Length = 600

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 589 IVDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKKHFFDIFARRVHQNKCP 753
           ++D  G  +FTE  + I  IK  F+ Q      +  +K H  +   +    N+CP
Sbjct: 90  VMDHNGEAYFTEIEQKIDEIKQEFKKQLKIKGIMDKIKHHLIEYKIKHDLPNECP 144


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
 Frame = -3

Query: 647 METIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSRNNCASK-HTFSKRSYVLNLKL 471
           ++T+H L      + LP   K+W    +     + I+S+N    K H  S+  + L++ +
Sbjct: 206 VDTLHNLQQDVVRKVLPLLHKIWKNVDKLGSSTDCINSKNQLQRKEHEISEAIFRLSMNI 265

Query: 470 YCNL*AHMV-----HSI*PYNMNDSNSLLITRLAAQILSRNIQTVDVIVDDKTLSLEEKI 306
            C   AH+       SI   +++D  + L+            +  ++ VD    SL  + 
Sbjct: 266 ACP--AHLEPDEVRRSIFGQSVSDYENFLLNYWEKSTYLVTRKQKNLHVDSVFTSLLNEF 323

Query: 305 DTLTSMVL---AVNGLPQSPPRVSSSDLAASS 219
           D  T   +    VNG+  S P ++S +L  SS
Sbjct: 324 DLKTPDTIIQSLVNGI-VSCPAIASDELDISS 354


>08_02_0017 - 11264038-11264260,11264376-11264653
          Length = 166

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 256 RRGYRPATWPHRALKIIANWW 194
           RR  + ATWP R+ + +A WW
Sbjct: 20  RRRAQGATWPKRSKEQMARWW 40


>01_07_0064 +
           40834649-40834786,40834934-40834997,40835333-40835391,
           40835602-40835677,40835775-40835846,40837641-40837728,
           40838239-40838497,40838766-40839000,40839447-40839470,
           40839910-40839997,40840110-40840300,40841082-40841322,
           40841803-40842556
          Length = 762

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 450 HGAFNITL*YERFQFTVDYAFGSANTVQKHSNG 352
           HGA    L Y R  F  D+ FGSA +  ++  G
Sbjct: 18  HGAAPAVLGYTRGDFPEDFVFGSATSSYQYEGG 50


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 353 VDVIVDDKTLSLEEKIDTLTSM-VLAVNGLPQ-SPPRVSSSDLAASSIKNNSKLVGNDFE 180
           VD +V+      E    TL ++    VNG  + SP R  S D A  S+K N+ L+  D+ 
Sbjct: 509 VDYLVEASAAEAEAISATLAAVKARQVNGEAEHSPDREQSPD-ATPSVKQNASLIKPDYA 567

Query: 179 MRYN 168
           +  N
Sbjct: 568 LSNN 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,148,050
Number of Sequences: 37544
Number of extensions: 420481
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)