Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n18
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 638 IHLLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 462
           + L +  +KV  L    K  LK F+    +  S  S  NC +K    K  YV ++K YC+
Sbjct: 75  VRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/87 (26%), Positives = 38/87 (43%)
 Frame = +1

Query: 499  FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 678
            FEN  FEA  +  E  S   L S +    +  DG+G     +  +  +S+K  FE +  N
Sbjct: 891  FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948

Query: 679  TDNIHNVKKHFFDIFARRVHQNKCPQF 759
             D   ++ + F  +  +   + K  QF
Sbjct: 949  DD--EDMPEVFASVNDKTERKRKSSQF 973


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +1

Query: 454 AYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNK 633
           AY+ + S+    +D FEN+ +      D++ S+   + K  +   +++    T   E   
Sbjct: 161 AYKRKKSVITEVFDEFENILWSVCSFSDKLTSIS-CYKKEMDPDCLIENVN-TLSNELEN 218

Query: 634 CIVSIKSSFENQANNTDNIH 693
               + + F     NTD IH
Sbjct: 219 -FEKVTAEFTKYLVNTDGIH 237


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 482 LTRTTASKTCVLKRNCYEMKSI--RCVF 559
           +TRTT  K C L  NC+    I  +CVF
Sbjct: 36  ITRTTPVKKCYLGENCFTKTPITQKCVF 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,235,743
Number of Sequences: 27780
Number of extensions: 407526
Number of successful extensions: 1223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)