Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n18
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    25   0.60 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.60 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.60 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.7  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 74  TDYFLFRQLNRRSSRCNTWDN 136
           TD  +FRQ    +++ N+WDN
Sbjct: 138 TDEVVFRQTKAIANKINSWDN 158


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 377 ILSRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAVNGLPQ 261
           +L++     DV+ D K      K++T+    +AV+GLP+
Sbjct: 439 MLNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPE 477


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 377 ILSRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAVNGLPQ 261
           +L++     DV+ D K      K++T+    +AV+GLP+
Sbjct: 439 MLNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPE 477


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 379 CAAKRVINSELESFIL*GYIECTMCAYRLQY 471
           C  K ++NS L+S        C  C Y  +Y
Sbjct: 26  CVNKSMLNSHLKSHSNVYQYRCANCTYATKY 56


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 720 NIEKMFFYIVYVVCVVGLILKTTFYGNNTFVKFCKKSKTFTVHDQALVEI 571
           N  K   + +Y  CV+ L     ++G    V     S + T+   A V I
Sbjct: 845 NESKHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMSVTISLSASVTI 894


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 254 PRVSSSDLAASSIKNNSKLVGNDFEMRYN 168
           P++ SS L+  +I NN+    N++   YN
Sbjct: 312 PKIISS-LSNKTIHNNNNYNNNNYNNNYN 339


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 136 RLTKTTAIRNTL 171
           RL KTTAI+N L
Sbjct: 68  RLLKTTAIKNVL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,554
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)