Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23n16
(206 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 25 1.0
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 24 3.2
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 23 4.2
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 23 4.2
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 23 7.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 7.3
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 23 7.3
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 23 7.3
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 23 7.3
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 23 7.3
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 23 7.3
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 22 9.6
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 22 9.6
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 22 9.6
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 82 QDTFEHRHFERTLRSVETHPGPLLSEG 162
QD E + + +++S TH PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 56 LTARHSVNCRTHLNIDISNAHCGPWRH 136
LT +H C T L D S G W H
Sbjct: 335 LTGKHCSECGTPLYSDPSPEELGIWLH 361
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 52 AVNCAS*CELQDTFEHRHFERTLRSVETHPGP 147
+++C + +L D F RHF + TH P
Sbjct: 67 SISCHADHDLVDLFNKRHFRCDCGTTRTHSIP 98
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 23.4 bits (48), Expect = 4.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = -1
Query: 98 CSNVSCSSHYDAQLTAFFID 39
C N+ C ++DA ++D
Sbjct: 277 CGNIGCGRYHDAHAKQHYVD 296
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Frame = -3
Query: 147 WSWMCLHGPQCAFEMSMFKCVLQF 76
W W CLH + F C+ F
Sbjct: 114 WIWTCLHFSKIIFPAQKVICLYIF 137
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 80 CRTHLNIDISNAHCGPWRHIQDHSCLRAGC 169
C +N S CG H+ SC+R C
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWC 229
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 132 LHGPQCAFEMSMFKCV 85
LHG Q FEM F C+
Sbjct: 901 LHGWQYVFEMLRFNCL 916
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Frame = -3
Query: 147 WSWMCLHGPQCAFEMSMFKCVLQF 76
W W CLH + F C+ F
Sbjct: 114 WIWTCLHFSKIIFPAQKVICLYIF 137
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Frame = -3
Query: 147 WSWMCLHGPQCAFEMSMFKCVLQF 76
W W CLH + F C+ F
Sbjct: 86 WIWTCLHFSKIIFPAQKVICLYIF 109
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 76 ELQDTFEHRHFERTLRSVETHPGP 147
ELQ T + +R +R +E GP
Sbjct: 278 ELQATLQEEESQRAVRILEAETGP 301
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Frame = -3
Query: 147 WSWMCLHGPQCAFEMSMFKCVLQF 76
W W CLH + F C+ F
Sbjct: 114 WIWTCLHFSKIIFPAQKVICLYIF 137
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 10 PWTVDHLARGSMKN 51
PW+V+ L R ++KN
Sbjct: 278 PWSVEALRRAALKN 291
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 5 HYPGRWITWLAGR 43
HY G+W W++ R
Sbjct: 586 HYAGKWPFWMSPR 598
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = -1
Query: 170 CSRPSDRSGPGCVSTDRNVRSKCRCSNVSCS 78
C + R G V + +CR N+ CS
Sbjct: 29 CRKQKTRCLAGSVEDENRACLRCRSLNMDCS 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,551
Number of Sequences: 5004
Number of extensions: 11603
Number of successful extensions: 27
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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