Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n07
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492...    28   1.9  
03_02_0227 + 6576333-6577769                                           28   1.9  
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938...    28   1.9  
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360...    27   4.4  
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    26   7.7  
06_01_1166 + 9931955-9933406                                           26   7.7  

>04_01_0374 +
           4914864-4914947,4915094-4915217,4921146-4921471,
           4921527-4921658,4921824-4922362,4922445-4922597,
           4922695-4922995
          Length = 552

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 97  RFEDDM--EVLYDGVHPNPLLAIQCINE-KLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQ 267
           R EDD+  + L    HP     I C N    Y   Y+ RK++K   D      +  EVIQ
Sbjct: 47  RREDDILTKALGTKGHPGRTRGIGCYNGLPQYSSQYRKRKVSKEERDACLKAELKVEVIQ 106

Query: 268 EV 273
           E+
Sbjct: 107 EL 108


>03_02_0227 + 6576333-6577769
          Length = 478

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 19  FSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHPNPLLA-----IQCINEKLY 183
           F   + DR+   ++ GQ+++F  R  R+     V+   V P P +A     +  ++ K +
Sbjct: 20  FVSAVRDRLDFYYLQGQDKYFESRAERY--GSTVVRINVPPGPFMARDPRVVALLDAKSF 77

Query: 184 DKHYKIRKIAKR 219
              + + K+ KR
Sbjct: 78  PVLFDVAKVEKR 89


>02_05_0483 -
           29391929-29392256,29393048-29393148,29393640-29393834,
           29394124-29394240,29394376-29394447,29394840-29394950,
           29395029-29395127,29395991-29396047,29396607-29397008,
           29397249-29397303,29397725-29397809,29398023-29398130,
           29398229-29398295,29398717-29398875,29399277-29399405
          Length = 694

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -2

Query: 258 LFNYIMSTIHVDYTFSYFSNFVMFIVEF-FVNTLNCQQGIWVHTVIEHFHVVFKAHFSLA 82
           L NY      ++Y F +    + F  EF F   +   + +W H   EHFH+         
Sbjct: 561 LHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWSEHFHLYLCVAILKR 620

Query: 81  KMSLLAQNKSEFDAVV 34
             S +   + +FD ++
Sbjct: 621 YRSRIIGEQMDFDTLL 636


>09_02_0051 -
           3606453-3606473,3606562-3606957,3608250-3608419,
           3609654-3610707
          Length = 546

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 154 AIQCINEKLYDKHYKIRKIAKRVIDVD 234
           AI+CI E   D+ Y I  + KRVI ++
Sbjct: 422 AIKCIEEHKLDEKYPIDLLQKRVIQLE 448


>09_04_0175 - 15353903-15354005,15354189-15354280,15354408-15354553,
            15354661-15354814,15354885-15354985,15355055-15355145,
            15355146-15355378,15355501-15355736,15355839-15356066,
            15356150-15356370,15356869-15356990,15357125-15357451,
            15357616-15357754,15357822-15357901,15358478-15358678,
            15359431-15359757,15360144-15360897
          Length = 1184

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 355  FYNQTILYIIYTK*IHTNNYYTCFYFTILLV*PL*LHYEYNPRRL 221
            FY   IL  + T  +H+ NY + F    ++  P  L++  NP  L
Sbjct: 954  FYQVNILSSLVTSLVHSMNYLSPFLSEYVVPRPGKLNFSDNPNEL 998


>06_01_1166 + 9931955-9933406
          Length = 483

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 193 NVYRRVFR*YIELPTRDLGAHRHRAL 116
           N +RR+   Y+E P  DLG  R RA+
Sbjct: 228 NTFRRLEGQYLERPLADLGFRRVRAI 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,234
Number of Sequences: 37544
Number of extensions: 146367
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)