Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n05
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical...    29   3.2  
U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    28   5.7  
AJ561201-1|CAD99204.1|  212|Caenorhabditis elegans NAS-4 protein...    28   5.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   7.5  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    27   9.9  

>AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical
           protein R12E2.2 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -1

Query: 278 RPSLNLAYAEC-TNVRPLSHNAQNCPAECNHYPTLQVFRRPCTDAREHF 135
           RP  N A  EC   +   +  A+N  A  N        R PC  A+E F
Sbjct: 126 RPPRNFASRECGAKIIAANPEAENAKAVVNEKDVDDYMRNPCQSAKEKF 174


>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
 Frame = +2

Query: 167 EKPAKLDSDCIQPGSFAHCVREAVRLYIPHM---QDSNLDALTLQYWPDVDRDIF----C 325
           ++P  LDS CIQ G+  H +  AV  +       +DS +D +        D D F     
Sbjct: 170 KQPVSLDSGCIQVGTIVHELMHAVGFFHEQSRQDRDSYIDVVWQNVMNGAD-DQFEKYNL 228

Query: 326 NVNKQIRAPYSY 361
           NV   +  PY Y
Sbjct: 229 NVISHLDEPYDY 240


>AJ561201-1|CAD99204.1|  212|Caenorhabditis elegans NAS-4 protein
           protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
 Frame = +2

Query: 167 EKPAKLDSDCIQPGSFAHCVREAVRLYIPHM---QDSNLDALTLQYWPDVDRDIF----C 325
           ++P  LDS CIQ G+  H +  AV  +       +DS +D +        D D F     
Sbjct: 138 KQPVSLDSGCIQVGTIVHELMHAVGFFHEQSRQDRDSYIDVVWQNVMNGAD-DQFEKYNL 196

Query: 326 NVNKQIRAPYSY 361
           NV   +  PY Y
Sbjct: 197 NVISHLDEPYDY 208


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 239 RLYIPHMQ-DSNLDALTLQYWPDVDRDIFCNVNK 337
           R Y+P++  D + D++T   WP  D D+F    K
Sbjct: 314 RPYLPYVTYDEHRDSVTDACWPSTDFDVFMTCGK 347


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 658 LLHCRILRSCRCARICT*NCA--CCI*MNPI*RCATIVGRLCGTFCS 524
           +L   + +S +C   C  +C   C   + PI +CAT   + C   CS
Sbjct: 491 ILEASVSQSAQCEPQCQQSCQQQCIQQLQPIQQCATACTQSCSQSCS 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,652
Number of Sequences: 27780
Number of extensions: 314503
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)