Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n04
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81069-7|CAB02994.2|  137|Caenorhabditis elegans Hypothetical pr...    87   9e-18
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical ...    29   4.6  
AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    28   8.1  

>Z81069-7|CAB02994.2|  137|Caenorhabditis elegans Hypothetical
           protein F25H9.7 protein.
          Length = 137

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 45/110 (40%), Positives = 63/110 (57%)
 Frame = +1

Query: 220 AVRMSSPEHVSRVRRLYKLIFRVHRGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNE 399
           A R  +PE       LYK I R+H GLP + R++GD Y +DEFKRHK    +  K F+ E
Sbjct: 7   AARAINPERFPLY--LYKSILRLHYGLPAQARLMGDTYVKDEFKRHKTAKPEFVKPFITE 64

Query: 400 WTDYAINLAKQMKPLHQAKNKMVGEYLDPSLLDHMSDEQIVQLYELHKAA 549
           WT+Y + L+KQ+      K   +G+ LD   ++ +S+E I QL EL   A
Sbjct: 65  WTNYCVMLSKQLSSAGIRKGN-IGKDLDSDKMEQLSNEHIQQLVELRVEA 113


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 238 PEHVSRVRRLYKLIFRVHR-GLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYA 414
           PE+   + R+ +L+   H+    P L   G   + D+  R K+   DEA   + +WTD++
Sbjct: 109 PENKKDIVRMLELVVDCHQFDAHPPLEEDGLASSTDKVDRKKRQQGDEAVEGVGDWTDWS 168


>AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical
           protein Y32H12A.5 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 106 NYNCCFKIIFSIDDGSTQVWCSLYGTVS 23
           +++ CFK IF++   +  +W  +YG V+
Sbjct: 296 SFSSCFKSIFALHTETGNIWTHMYGCVA 323


>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 328 CLPGHGVRAASPGEPGRSICRAGEP 254
           CLPG    A +PG+PGR   +AG P
Sbjct: 105 CLPGAAGPAGTPGKPGRP-GKAGAP 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,951
Number of Sequences: 27780
Number of extensions: 360842
Number of successful extensions: 1538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)