Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n04
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.0  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 625 RLCFVSRTTHDPTRCNNPALATLQR 699
           R CF SRT  DP+    PA A  ++
Sbjct: 376 RKCFKSRTNLDPSNRKLPAPANWKK 400


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 167 VYCQLQICFGSVDFIGYWRFGCHHPNMC 250
           V C +    G  D +GYW FG   P  C
Sbjct: 74  VGCLVMTFAGVNDLLGYWVFG---PRFC 98


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 219 GGSDVITRTCVAGSPALQIDLPGSPGLAA 305
           G  D+  R C+ G  +  +D+   PGLAA
Sbjct: 33  GKXDLFAR-CMGGINSRNMDIEHDPGLAA 60


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 634 SRAFNATAHAARR 596
           SR FNA+ H+A+R
Sbjct: 747 SRIFNASKHSAKR 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,944
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)