Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23m24
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 0.71
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.2
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.6
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 3.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.0
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 5.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.8
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 8.8
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 526 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRD 699
LN ++ +R +N++ T QG + + +NF NK N L E DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR- 172
Query: 700 KIESVLKHVKKLNTNS 747
K V+ V +N N+
Sbjct: 173 KGAYVISPVPFINGNN 188
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = +1
Query: 538 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 717
I ++++ D SL ++ ++ NF +++ H ++ + +LR + +
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
Query: 718 KHVKKLNTNSE 750
KH K+ N+E
Sbjct: 307 KHAKEAQKNAE 317
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 532 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 651
++ FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 79 QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Frame = +2
Query: 59 SNLDALTLQYWPDVDRDIFCNVNKQIRAPYS----------YNYKGTKFSRCITKELLDK 208
S ++ LQ WPDV +F + ++ P S ++Y+GTK + L K
Sbjct: 267 SRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKK 326
Query: 209 LK 214
LK
Sbjct: 327 LK 328
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 481 RAQFQDLCKNLLHCRIL 431
RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 72 ASKFESCICGMYKRTASLTQCAKL 1
+S E+C+ MYK + S+ QC L
Sbjct: 621 SSLLEACMGNMYKNSGSVFQCGSL 644
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 331 HINVQQWSHIVKWDSFKCNTHSF 399
H++V WS I K+D++ S+
Sbjct: 74 HLSVDSWSSITKYDNYTVENESY 96
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 592 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 449
RT +P D +W +AC++ +N K R P C Q+C +Q D NL
Sbjct: 81 RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 568 LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 717
+ S G L A T+ G+ + LMR +F+ L+ GE+DD + E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 150 LYGARICLLTLQKISLSTSGQYCNVSASKFESCI 49
+Y R CL+ + L QYC + ESC+
Sbjct: 82 IYNKR-CLMAYHNLRLQRLRQYCWSGGKRMESCL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,430
Number of Sequences: 5004
Number of extensions: 53227
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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