Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m23
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...   161   7e-41
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    31   0.12 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score =  161 bits (392), Expect = 7e-41
 Identities = 93/232 (40%), Positives = 118/232 (50%), Gaps = 2/232 (0%)
 Frame = +1

Query: 1   DDSLTVLPISS--KTAQIDPVDATPERVNPKLTELISSLSDSPPAGPLVALTRTYDQXXX 174
           DD L VLPIS       + P           + EL  SL +  PAG LV +T+T DQ   
Sbjct: 202 DDELNVLPISGGKNVKALPPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLDQARA 261

Query: 175 XXXXXXXXXDKQSRPPHCLTAARGRGKSACXXXXXXXXXXXXYVNIYVTSPHPENLITLF 354
                    +K  +    LTA RGRGKSA             Y NI++TSP PENL TLF
Sbjct: 262 VLTFVESIVEKSLKGTVSLTAGRGRGKSAALGLAIAAAIAHGYSNIFITSPSPENLKTLF 321

Query: 355 EFLLRGLDACLYQEHIDYNIVRSTNPDFKKAIVRVNIARNSRQTVQYITPXXXXXXXXXX 534
           EF+ +G DA  Y+EH+DY+I++STNP +  AIVRVNI R+ RQT+QYI+P          
Sbjct: 322 EFIFKGFDALNYEEHVDYDIIQSTNPAYHNAIVRVNIFRDHRQTIQYISP-EDSNVLGQA 380

Query: 535 XXXXXXXXXXXXXXXXXXXXXXXXXXXSSTVSGYEGTGRALSLKLFAQLQTQ 690
                                      +ST++GYEGTGR+LSLKL  QL+ Q
Sbjct: 381 ELVVIDEAAAIPLPLVRKLIGPYLVFMASTINGYEGTGRSLSLKLLQQLREQ 432


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 301 YVNIYVTSPHPENLITLFEFLLRGLDACLYQEHIDYNIVRSTN 429
           +V +YV  P  ENL    +FLL     CL  E +DY +  S N
Sbjct: 159 HVEVYVYEPTEENLYVHHDFLLPTFPLCL--EWLDYKVGTSDN 199


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 251 PRPRAAVKQCGGLDCLSANVLMSAIRAVAWSYVRVK 144
           P    AV++ GGL C+  N  +S I   +  Y+RV+
Sbjct: 599 PSSLKAVQKLGGLQCIIRNDNLSHIFNCSRKYIRVQ 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,856
Number of Sequences: 5004
Number of extensions: 44673
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)