Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23m23
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 146 2e-35
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 31 0.89
04_04_0864 - 28852252-28854582 30 1.5
03_01_0506 + 3816676-3817971 30 2.0
08_02_0631 - 19509416-19509868 29 4.7
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 4.7
09_03_0109 + 12430601-12431080 28 6.2
03_01_0653 - 4778265-4778902,4779738-4779853,4779982-4780051,478... 28 8.3
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 146 bits (353), Expect = 2e-35
Identities = 87/236 (36%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Frame = +1
Query: 1 DDSLTVLPISSKTAQIDPV------DATPERVNPKLTELISSLSDSPPAGPLVALTRTYD 162
DD L +LPISS I PV + ER +L +L + P GPL+ T D
Sbjct: 200 DDELNILPISSHMKFIQPVTNNEDSEGLSERER-ELKDLKDQFREDFPVGPLIGKCFTMD 258
Query: 163 QXXXXXXXXXXXXDKQSRPPHCLTAARGRGKSACXXXXXXXXXXXXYVNIYVTSPHPENL 342
Q DK R L AARGRGKSA Y NI+VT+P PENL
Sbjct: 259 QGKAVINFLDSILDKSLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 318
Query: 343 ITLFEFLLRGLDACLYQEHIDYNIVRSTNPDFKKAIVRVNIARNSRQTVQYITPXXXXXX 522
TLF+F+ +G++A Y+EH+ Y++V+S +P+ KKA +++N+ + RQT+QY+ P
Sbjct: 319 KTLFDFVCKGMNALEYKEHLHYDVVKSADPELKKATIQINVYKQHRQTIQYLKP-HDHGK 377
Query: 523 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTVSGYEGTGRALSLKLFAQLQTQ 690
SSTV+GYEGTGR+LSLKL QL++Q
Sbjct: 378 LSQVELLVIDEAAAIPLPIVKSLLGPYLVFLSSTVNGYEGTGRSLSLKLLQQLESQ 433
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 31.1 bits (67), Expect = 0.89
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = -2
Query: 272 SPRHADLPRPRAAVKQCGGLDCLSANVLMSAIRAVAWSYVRVKATNGPAGGESDSDDMSS 93
SP H+D RPR V G LS V + + A + + + P GG + D+ S
Sbjct: 156 SPNHSDSSRPRFGV-NFG----LSRAVSLGSSVACSILSSDLSTSANPDGGHGNVDNSSD 210
Query: 92 VNFGLTRSGVASTGSIWAVLDDIGRTVS 9
N +++ G AST I + LD + +V+
Sbjct: 211 AN--ISQQGGASTAGIDSTLDMLRDSVT 236
>04_04_0864 - 28852252-28854582
Length = 776
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 251 PRPR-AAVKQCGGLDCLSANVLMSAIRAVAWSYVRVKATNGPAGGESDSDDMSSVNFGLT 75
PR R AA K C C S+++L + RAV+ + + G D +S +FG
Sbjct: 256 PRARVAAYKVCWAGGCFSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIASFGAM 315
Query: 74 RSGV 63
+ GV
Sbjct: 316 QMGV 319
>03_01_0506 + 3816676-3817971
Length = 431
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 218 GLDCLSANVLMSAIRAVA-WSYVRVKATNG--PAGGESDSDDMSSVNFG 81
G CL + L S+ + W+Y+ + NG PA +++++DM V+FG
Sbjct: 5 GNSCLISRSLPSSCEPESQWAYLSHEVLNGKRPAPEDAEAEDMDEVDFG 53
>08_02_0631 - 19509416-19509868
Length = 150
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 610 ERVAPSGRPRLRAPAGWLRLHLPAPDQQPTVVSGRLGLCIVRSV 479
ER GR LR LR LP P +Q + V G G IVR +
Sbjct: 100 ERGGRGGRGGLRGVGARLRRPLPRPGEQHSGVGGGRGGLIVRLI 143
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 DDSLTVLP--ISSKTAQIDPVDATPERVNPKLTELISSLSDSPPAGPLV 141
+ S LP +SS +A + + TP VNP ++ + S++S S PL+
Sbjct: 303 ESSANQLPNMLSSVSASVFSLGLTPPSVNPPVSTIESTMSQSQGISPLM 351
>09_03_0109 + 12430601-12431080
Length = 159
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 692 CWVCSCAKSFKDRARPVPSYPETV--DDSR 609
CW+C + + VP YP+ V DDSR
Sbjct: 53 CWLCGPSAGKSETFAEVPGYPDNVRRDDSR 82
>03_01_0653 -
4778265-4778902,4779738-4779853,4779982-4780051,
4780189-4780402
Length = 345
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 10 LTVLPISSKTAQIDPVDATPERVNPKLTELISSLSDSPPAGP 135
L P+S++T + PV+ E +P S+ SD PPA P
Sbjct: 189 LAAKPVSARTNRSRPVELPVEETSPP----SSTSSDKPPAAP 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,524,794
Number of Sequences: 37544
Number of extensions: 364290
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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