Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m23
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...   167   7e-42
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    31   1.1  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    28   5.6  

>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score =  167 bits (406), Expect = 7e-42
 Identities = 90/234 (38%), Positives = 124/234 (52%), Gaps = 4/234 (1%)
 Frame = +1

Query: 1   DDSLTVLPISSKTAQIDPVDATPERV----NPKLTELISSLSDSPPAGPLVALTRTYDQX 168
           DD L VLPISS    ++ + A+ +++    + +L  L  ++ ++ P GPL++  RT  Q 
Sbjct: 200 DDQLRVLPISSHIENVEAIPASQKKIQSESDAELASLKEAMKETKPIGPLLSRARTACQA 259

Query: 169 XXXXXXXXXXXDKQSRPPHCLTAARGRGKSACXXXXXXXXXXXXYVNIYVTSPHPENLIT 348
                      +KQS     LTA RGRGKSA             Y NI+VTSP PENL T
Sbjct: 260 KALLRFLDVITEKQSNVTCSLTAGRGRGKSAAVGLSLAGAIAFGYTNIFVTSPSPENLKT 319

Query: 349 LFEFLLRGLDACLYQEHIDYNIVRSTNPDFKKAIVRVNIARNSRQTVQYITPXXXXXXXX 528
           LFEF+++G DA  YQEH DY +++S NP+FK  +VR+N+ R  +QT+QYI+P        
Sbjct: 320 LFEFVVKGFDALDYQEHTDYELIQSANPEFKNCLVRINVFREHKQTIQYISPTDVQKLGQ 379

Query: 529 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTVSGYEGTGRALSLKLFAQLQTQ 690
                                        SST++GYEGTGR+LSLKL  QL+ Q
Sbjct: 380 CELIVIDEAAAIPLPLVKELISGPYISFLSSTINGYEGTGRSLSLKLLQQLRQQ 433


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 135 VSGFNSDI*PGNGPDCTHQHISRQAIKASALLDG 236
           +SG NSDI PG G +C   +IS  +++   LL+G
Sbjct: 510 ISGVNSDIDPG-GSECAMCNISEDSMETIGLLNG 542


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 140 TNGPAGGESDSDDMSSVNFGLTRSGVASTGSIWAVLDDI 24
           TNGP   +S+    S + F  T +G +S+ S+  V DD+
Sbjct: 197 TNGPVPADSNQSIDSMIVFNTTPNGRSSSESLSVVDDDV 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,830
Number of Sequences: 27780
Number of extensions: 280779
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)