Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m23
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 377 TLACTKSTLIITL*GQRIRISRRPLSESISLGTLDRPY 490
           TLACT  TL I      +  +R P+ + +S G   R Y
Sbjct: 490 TLACTAGTLGIIFQAPSLYDTREPVDQQLS-GISPRNY 526


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 147 NSDI*PGNGPDCTHQHISRQA 209
           NSD+ PG+G     QH S  A
Sbjct: 268 NSDVQPGHGSPPVKQHRSSSA 288


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 628 RQWTTAERVAPSGRPRLRAPAGWLRLHLPAP 536
           RQ    E  + +G   L+  A WL LH   P
Sbjct: 491 RQRLRKELDSKTGGVNLKGHAHWLTLHFKDP 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,190
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)