Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m20
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1489 + 30492702-30493760                                         30   1.0  
01_06_1557 - 38231826-38233391                                         27   9.3  

>06_03_1489 + 30492702-30493760
          Length = 352

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 458 SKQRGRTRTWNVTYVSNT---GLFIYRLSKIYLHKNYYTSHCSSDKRYHINI 312
           SKQ G  +  N    +     GL   ++S ++  K + TSHCSSD +   N+
Sbjct: 285 SKQNGAEKRLNQLVDAKDPGDGLAPMKISSVWRFKKFKTSHCSSDSKVLHNV 336


>01_06_1557 - 38231826-38233391
          Length = 521

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 515 LSISFYFH*RHHPCILSAISKQRGRTRTWNV 423
           L+++ Y   R   C+ SA+S++ GRTR W V
Sbjct: 59  LTLTCYSRARVAACV-SAVSRRLGRTRAWAV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,361
Number of Sequences: 37544
Number of extensions: 164602
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)