Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m20
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    27   8.3  

>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 441  PPPLFANGAQNAWMMSSMEIKTNRKLKKK 527
            PPPLF NG Q     SS+  K N    KK
Sbjct: 1109 PPPLFGNGLQKMRSESSLHEKINGLTTKK 1137


>Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.3 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 391 IGFQKFIYTKI-ITLHIVPRISDITLISYYSFFFKMLPFIRK---NTSNMYRKYNNEA 230
           I F+   + KI + +H+   +S+ T I +YS    M   IRK   NTSN  RK + +A
Sbjct: 193 IVFESDFFAKINVIVHL--SLSNFTFIGHYSLSAYMFFKIRKTTSNTSNQTRKLSRKA 248


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/78 (21%), Positives = 38/78 (48%)
 Frame = +3

Query: 132 YIAFLLYINNTID*KNYSNIFFLFIETQLNIFGASLLYFRYILDVFFLINGNILKKKL*Y 311
           YI FL++I   +  K   ++  ++      IF   ++    +  +  L++  +  K L +
Sbjct: 25  YILFLIFIAKKVSLK--PDLKLIYCRFVAEIFFHFVVVLNKLYSIVGLVSTTMFVKNLIF 82

Query: 312 DINVISLIRGTM*SVIIF 365
            +  +SL+ GT+ + I+F
Sbjct: 83  YLIWLSLVMGTIKTTIVF 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,808,175
Number of Sequences: 27780
Number of extensions: 180180
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)