Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m19
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    54   1e-07
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508...    30   1.6  
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429...    30   2.1  
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    29   3.7  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   6.5  

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
 Frame = +3

Query: 270 VVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVD 449
           +V DD  V  D   +  +  ++T  +F K    +      + AG   E  VG  N+G   
Sbjct: 47  IVSDDTQVSSD-GPLSPAPGVETVCVFPKNAGKI------VLAGEETELLVGLQNEGEST 99

Query: 450 YVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 626
             V ++ ++   P D+  Y QN T    +N  V    +ATF Y+F  ++      + L  
Sbjct: 100 LNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATFPYTFAVSKFLQPGAYDLVG 159

Query: 627 QLNYRDASGNAYQEAVYNQTLNIVE 701
            + Y +   N YQ   YN T+ +VE
Sbjct: 160 YIVY-EIDQNPYQNVFYNGTVEVVE 183


>05_01_0573 -
           5083030-5083151,5084639-5084738,5084790-5084829,
           5085122-5085567
          Length = 235

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 460 NPWRHLSGIQWTTHTTFRTSPRCLITEKLSQNRKPPLPIPSSPMKLLL 603
           N W+  S   W++ +    S  C  T+K S  R  P P PSS  + LL
Sbjct: 66  NGWQGGSTDHWSSVSRSHCSNGCCTTQKPSSRRVLPPPNPSSSSQYLL 113


>10_02_0022 -
           4290708-4290788,4291254-4291305,4291396-4291484,
           4291565-4291615,4291699-4291893,4292010-4292090,
           4292190-4292252,4292480-4292554,4292630-4292710,
           4292784-4292888,4292977-4293057,4293156-4293242,
           4293322-4293369,4293923-4293987,4294109-4294172,
           4294828-4294896
          Length = 428

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 267 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 398
           Q+VGDD LV +   V K+ Q+     L  K V  +G +T  I+A
Sbjct: 326 QIVGDDLLVTNPTRVAKAIQEKSCNALLLK-VNQIGSVTESIEA 368


>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 466 WRHLSGIQWTTHTTFRTSPRCLITEKLSQNRKPPLPIPSSPMKLLL 603
           WR  + +  T H   R  PR     + S   KP +P P+ P+  LL
Sbjct: 174 WRKGNPVS-TVHKVVRDHPRSESRNQSSSTAKPSMPAPTKPVPPLL 218


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 267 QVVGDDALVDDDESVVKSSQDIDT-TILFTKPVPSLGDLTFD-IQAGYPVEFFVGFINK 437
           +V+G + L+D    + K  +D+D  TI   +  P       D I++ Y  EFF+GF+ +
Sbjct: 81  EVLGGNELIDSQIDI-KFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGFVGE 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,810,273
Number of Sequences: 37544
Number of extensions: 377090
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)