Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23m19
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 157 3e-38
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 157 3e-38
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 157 3e-38
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 157 3e-38
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 157 3e-38
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 157 3e-38
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 157 4e-38
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 157 5e-38
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 155 1e-37
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 157 bits (382), Expect = 3e-38
Identities = 76/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 157 bits (382), Expect = 3e-38
Identities = 76/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 157 bits (382), Expect = 3e-38
Identities = 76/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 157 bits (382), Expect = 3e-38
Identities = 76/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 157 bits (382), Expect = 3e-38
Identities = 76/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 157 bits (382), Expect = 3e-38
Identities = 76/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 157 bits (381), Expect = 4e-38
Identities = 75/145 (51%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Frame = +3
Query: 288 LVDDDESVVKSS-QDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVES 464
L +D+E+V S +D D + P+ DL D A V+F VGF NKG+ D++VES
Sbjct: 35 LTEDEETVEDSIIEDEDDEAEVEEDEPT--DLVEDFPANNIVKFLVGFTNKGTEDFIVES 92
Query: 465 MEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRD 644
++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY+D
Sbjct: 93 LDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKD 152
Query: 645 ASGNAYQEAVYNQTLNIVEVSEGLD 719
+GN +Q+AV+NQT+ ++E +GLD
Sbjct: 153 LNGNVFQDAVFNQTVTVIEREDGLD 177
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 157 bits (380), Expect = 5e-38
Identities = 75/142 (52%), Positives = 99/142 (69%)
Frame = +3
Query: 294 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 473
+D ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++A
Sbjct: 71 EDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDA 122
Query: 474 SFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 653
SFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY+D +G
Sbjct: 123 SFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNG 182
Query: 654 NAYQEAVYNQTLNIVEVSEGLD 719
N +Q+AV+NQT+ ++E +GLD
Sbjct: 183 NVFQDAVFNQTVTVIEREDGLD 204
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 155 bits (377), Expect = 1e-37
Identities = 75/147 (51%), Positives = 101/147 (68%)
Frame = +3
Query: 279 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVV 458
+D +D ++S DTTILF K G+ D A V+F VGF NKG+ D++V
Sbjct: 66 EDKEEEDVSGEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIV 117
Query: 459 ESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNY 638
ES++ASFRYP D+ +YIQNFTALP N V P+++ATF YSFIP E GRPFGL + LNY
Sbjct: 118 ESLDASFRYPQDHQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNY 177
Query: 639 RDASGNAYQEAVYNQTLNIVEVSEGLD 719
+D +GN +Q+AV+NQT+ ++E +GLD
Sbjct: 178 KDLNGNVFQDAVFNQTVTVIEREDGLD 204
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,960,030
Number of Sequences: 237096
Number of extensions: 2118872
Number of successful extensions: 4317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4310
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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