Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m16
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    29   0.73 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   1.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.9  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    27   3.9  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   3.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.1  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   5.1  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.1  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   5.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   6.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.8  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    25   9.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   9.0  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 80  LTSYFDLKDNEHVPSEPM--AFIRNYLNCTFDLLDDAVLM 193
           ++++ DL DN H+P + M    I   LN TFD   D  LM
Sbjct: 332 ISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLM 371


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 506 DDAYVDWNGVRMCAAPRLD 562
           DDA++DWN +R C+A  LD
Sbjct: 384 DDAFMDWN-LRKCSAAALD 401


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 453 TNILFLNTLPNSAYRKAIILRGLDVN-RFVAYTCV 352
           TNI+  N LP S++ K ++L+ L+ N +FV +  V
Sbjct: 340 TNIIIENILP-SSFSKPVVLKALNGNDKFVCFLTV 373


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 122 SEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFK 265
           SEPMAF+   +N  + LL ++++    N ++   L+ L+  T T + K
Sbjct: 127 SEPMAFMSENVNLQYALL-NSIIDKMNNNIKKPNLEFLMPCTITKLSK 173


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 476 VLAGSAVFLFDDAYVDWNGVRMCAAPRLDNNMHPFRLYLLGEDMA 610
           +++GS V L +D +  +    +CA P    N HP  + +  ED++
Sbjct: 239 LISGSLVLLSNDDFQTFRIGTVCARPLSGLNKHPHEIDVKFEDIS 283


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 104  DNEHVPSEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVK 274
            DN+  P E  AF+R+ L    D  DD  L   +  LQ  +L  L+  T   +  F K
Sbjct: 1342 DNKSTPEEREAFLRSLLEHDGD--DDHDLT--YGELQDDELNELISRTDEELVLFKK 1394


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 599 EDMAKHFVDNNILPPHPSNAKTRKINNSMFM 691
           E   KH +  NI    PS  K + +N+S+F+
Sbjct: 71  ESATKHSIFVNICVHEPSKVKNKLLNSSLFI 101


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 620 VDNNILPPHPSNAKTRKINNSMFMLKNFYKGL 715
           V N+  PP P+N  T   N+     K FYK L
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSL 169


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +2

Query: 533 VRMCAAPRLDNNMHP----FRLYLLGEDMAKHFVD--NNILPP 643
           +RMC+A R D  +H       L +L      H V+  N+ILPP
Sbjct: 87  IRMCSAARTDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPP 129


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 581 RLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFML 694
           R+ L G+D +K  +  N LP HP +      ++S   L
Sbjct: 79  RVKLFGKDKSKASMSTNDLPSHPRSQSVMGFSSSTSQL 116


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 510 SSNKKTALPANTQP*LLMFTNILFLNTLPNSAYRKAI 400
           SS + T+LP  +     +F NI  LN+LP+S  ++ I
Sbjct: 428 SSLEFTSLPGQSSDTWSIFWNISSLNSLPSSLSKREI 464


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 659 KTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIV 763
           K  KINN  F L + YK LP     + +VN+ +++
Sbjct: 91  KKEKINNCSFRLGSIYK-LPFPDNTFDIVNTHQVL 124


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 498 FCSTTRTWIGMVCE 539
           +CS++ TW+G +C+
Sbjct: 156 YCSSSGTWVGKICK 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,217
Number of Sequences: 5004
Number of extensions: 70148
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)