Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m16
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1449 - 27174451-27178005                                         31   1.0  
06_01_0726 + 5319809-5319839,5319918-5319976,5320859-5320927,532...    29   4.1  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    29   5.4  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    28   7.1  
12_01_1035 + 10656345-10656347,10656694-10656864,10656922-106577...    28   9.4  
10_07_0112 - 12986547-12988502                                         28   9.4  

>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 161 CNSNSCE*MPSALKEHVHYLLNQNSWSKINI*NDLFPE 48
           CN  S E  P   K H+HYL N   W    + + +FPE
Sbjct: 838 CNG-SLEIFPKLKKMHLHYLPNLEKWMDNEVTSVMFPE 874


>06_01_0726 +
           5319809-5319839,5319918-5319976,5320859-5320927,
           5321009-5321071,5321360-5321419
          Length = 93

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 221 QLKHLVGSTST-NIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRK 397
           Q K +V   ST N  +  + +F+   N   + I++F  R   +    +Y  + F+ NP +
Sbjct: 8   QKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDE 67

Query: 398 MMAFLYAEFG 427
           ++  LY  FG
Sbjct: 68  LIIDLYNNFG 77


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 RNYLNCTFDLLDDAVLMNYFNYLQSMQLKHL 235
           +NY N   D L+DA L+ +  YLQ   +K L
Sbjct: 592 KNYSNALCDKLEDAKLVQHSRYLQLSAMKSL 622


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +2

Query: 248 STNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFL--YAE 421
           S N+ K VKP   F+  +  +D  +      +    ++Y++ LFTSNP K+   +    E
Sbjct: 660 SANLDKVVKPNLAFL-KQCGIDARD------VASNPNLYSSRLFTSNPMKLRDAVARVEE 712

Query: 422 FGKVFKNKIF 451
            G V  +++F
Sbjct: 713 LGMVRGSRVF 722


>12_01_1035 +
           10656345-10656347,10656694-10656864,10656922-10657728,
           10657881-10659092
          Length = 730

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 86  SYFDLKDNEHVPSEPMAFIRNYL-NCTFDLLDD-AVLMNYFNYLQSMQLKHL 235
           S F    +E +P E    ++ Y+  C   L+DD  +LMN++N L  M   HL
Sbjct: 146 SSFPQTRDESIP-EAWERLQEYVATCPHHLMDDWLILMNFYNGLTPMSHDHL 196


>10_07_0112 - 12986547-12988502
          Length = 651

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 522 STYASSNKKTALPANTQP*LLMFTNILFLNTLPNSAYRKAI 400
           + YA S   TA  A T P   +   +  L++LP SAY  AI
Sbjct: 48  AAYALSTTATATDARTSPPSPLRHALALLSSLPASAYNAAI 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,550,362
Number of Sequences: 37544
Number of extensions: 458108
Number of successful extensions: 1101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)