Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23m16
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.58 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.77 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   1.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38  NLLT-LERDHFKYLFLTSYFDLKDNEHVPSEPMAFIRNYLNCTFDLLDD 181
           N+LT ++   FK LF     DL++N     E  AF+  Y   T +L D+
Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDN 393


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 430 LAKFSVQESHHFTRIGRKQVRGVHVRA 350
           L +F   E+HH  R GR+Q R + + A
Sbjct: 72  LLRFENPETHHPIRHGRRQSRSMDLNA 98


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 321 SKMSTVVRLHTNRNCGFTN 265
           S  ST+VR H N  C  TN
Sbjct: 335 STKSTIVRNHLNSTCSVTN 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 587 YLLGEDMAKHFVDNNILPPHPS 652
           Y  G D   H   +  LPP P+
Sbjct: 304 YFFGRDSVDHVDFDEFLPPPPN 325


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 473 CVLAGSAVFLFDDAYVDWNGVRMCAAPRLDNN 568
           C  + SAV   +D    W+G  M      D+N
Sbjct: 245 CYSSDSAVLSDEDQTKGWDGSNMVEGNESDHN 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,488
Number of Sequences: 438
Number of extensions: 4897
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)