Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l21
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   4.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.0  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.1  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   9.3  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LMLSKPCGCALCFHCITH 456
           L++  PCG  LC  C+TH
Sbjct: 756 LLIIVPCGHFLCRECLTH 773


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 376 TFTHTITNTLMLSKPCGCALCFHCI 450
           T+ H +     +S+P  C LC+ CI
Sbjct: 163 TYDHKLCLRKTISEPVKCNLCYECI 187


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 379 FTHTITNTLMLSKPCGCALCFHCITHNAFSCRRYFYNFGISGN 507
           + H  T+ L+L++        + + HNA +    F NFG S +
Sbjct: 323 YAHNNTDMLILNRTKDSLEARNSVFHNAVTFANAFMNFGTSSD 365


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 375 HFHTYYNKYTNAFEALWLCSLFSLYHSQ 458
           +F ++++ Y NAF    +C +F LY+ Q
Sbjct: 416 YFVSHFSLY-NAFSVFSVCGVFGLYYLQ 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,622
Number of Sequences: 5004
Number of extensions: 41340
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)