Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l21
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0638 - 4819365-4819685,4819702-4819882,4820018-4820073,482...    29   3.2  
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281...    27   9.7  
03_02_0849 - 11768191-11771412                                         27   9.7  

>01_01_0638 -
           4819365-4819685,4819702-4819882,4820018-4820073,
           4820107-4820148,4820484-4820639,4820681-4820809,
           4821072-4821254,4821374-4821524,4821670-4821848
          Length = 465

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +1

Query: 385 HTITNTLMLSKP---CGCALCFHCITHNAFSCRRYFYNFGISGN*VIQVVHRRAVLLSCA 555
           H I    ML K    C C LC   ITH +   R+           +  +V RRA  L+ A
Sbjct: 336 HQILEVSMLLKKLIFCMCILCSDMITHTSLEIRKMVVE-------ICDIVARRAARLAAA 388

Query: 556 SRSAILLE 579
             + IL++
Sbjct: 389 GVAGILMK 396


>12_01_0368 +
           2815424-2815658,2816898-2817120,2818329-2818680,
           2819354-2819620
          Length = 358

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 402 CICYSMCESVYPTVPTYIVIFLMCWSVIVMPLFRND-RNL 286
           CICYS  ES    +    V  L    VIVM  +R D RNL
Sbjct: 149 CICYSTKESSSVNMVLTAVHVLFIMFVIVMGFWRGDTRNL 188


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 598 LLSKNVSQEEWLTLKHNSTILPYDGRLESPNFQISQNY 485
           L   N  +EEWL + +   IL  D     P+ QIS ++
Sbjct: 385 LSDTNGEEEEWLNISNQMRILNEDNNRILPSLQISYHH 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,889
Number of Sequences: 37544
Number of extensions: 226506
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)