Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l21
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U97012-4|AAK39148.1|  340|Caenorhabditis elegans Serpentine rece...    29   2.1  
Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    29   3.7  

>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 314 CHYFVTIEI*IAFILICNYYFYCFF 240
           CH+F    I I+F++  NY++YC F
Sbjct: 186 CHFF---SIAISFVITLNYFYYCTF 207


>U97012-4|AAK39148.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 16 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 399 ICYSMCESVYPTVPTYIVIFLMCWSVI 319
           + Y M  +  P  P YI IF+  W +I
Sbjct: 192 VVYGMLHTTLPVTPIYIAIFITRWKII 218


>Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical
           protein F57G8.8 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 374 SIPLYLHTLLFS*CVGQLL*CHYFVTIEI*IAFILICNYYF 252
           SI L+L T+L       L+ CH+ ++I + +  +LIC+ +F
Sbjct: 99  SIGLFLITILSVTPAYTLILCHWLISIALHMPAVLICHAHF 139


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 377 VSIPLYLHTL--LFS*CVGQLL*CHYFVTIEI*IAFILICNYYFYCFFLQFLPYPPYR 210
           +S PLY+ TL  LF           YF+ + I I  I  C   F    + +LP+P +R
Sbjct: 24  ISFPLYIVTLNALFRESSQIFSTYKYFIIVHIIINIISECYVSFMMLPMTYLPHPMFR 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,830
Number of Sequences: 27780
Number of extensions: 234540
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)