Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l07
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    29   0.26 
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    24   7.3  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    24   9.7  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 245 QETVTVQKQKYETTLLENYDIRNRNATT 328
           QET    KQK +TT  E+Y++RNRN  T
Sbjct: 228 QETQD-DKQKPKTTQQEHYNLRNRNQAT 254


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 124 KLIAFSRRVVGLDDIDD 74
           KL  F +RV+G D +DD
Sbjct: 529 KLHVFLQRVIGFDSVDD 545


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -3

Query: 294 SNKVVSY-FCFCTVTVSW 244
           +N VV Y F FCT  +SW
Sbjct: 416 NNSVVLYNFNFCTTRISW 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,058,784
Number of Sequences: 5004
Number of extensions: 15761
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)