Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l07
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   1.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   1.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   1.6  
U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    27   3.6  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ PT+      +    +GN I  I +A+ +P   D  G FV  +  +I++
Sbjct: 4070 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4121



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
            +++ P++ + +        G  I  ++  + SP   D  G FVNR+  +++
Sbjct: 2377 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2427



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ P+  ++   +     GN I  I + + +P   D  G FV  +  +I++
Sbjct: 5455 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5506


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ PT+      +    +GN I  I +A+ +P   D  G FV  +  +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
            +++ P++ + +        G  I  ++  + SP   D  G FVNR+  +++
Sbjct: 2440 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2490



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ P+  ++   +     GN I  I + + +P   D  G FV  +  +I++
Sbjct: 5500 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5551


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ PT+      +    +GN I  I +A+ +P   D  G FV  +  +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
            +++ P++ + +        G  I  ++  + SP   D  G FVNR+  +++
Sbjct: 2440 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2490



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ P+  ++   +     GN I  I + + +P   D  G FV  +  +I++
Sbjct: 5500 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5551


>U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical
           protein E04F6.5a protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  ISRVTGGRTGNNIVDIIQAN 97
           +SRVTGG TG+N   ++ A+
Sbjct: 467 VSRVTGGNTGSNFGQVVDAS 486


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -3

Query: 330 YVVAFLFLIS*FSNKVVSYFCFCTVTVS 247
           ++V F+F+IS + ++++ Y  FC + ++
Sbjct: 155 FLVPFIFIISTYFSEILQYGYFCVIAIT 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,909,292
Number of Sequences: 27780
Number of extensions: 90552
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)