Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l05
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    29   0.69 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.91 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   2.1  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.7  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   6.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.4  

>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = -3

Query: 701 WELGMSSIDVSPGIGQSYKNLASTPFQAAKLKYFTDNGSTSLKLIKG 561
           W+LG S++D+   + +  K + S P + ++L+   + G T + +++G
Sbjct: 271 WDLGFSAVDIVTNMFRVVKTMDSIP-EFSRLEMLKEIGQTHMIILEG 316


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 194 AVKSISVDTVTATKLST--GWTRTK*EASTLTLIQSSRCTSRSKPPATDI*CSLKSLILA 367
           +  S +  + ++T LS+    T T   ++ L+ + S+  TS S  P T +  +  +   +
Sbjct: 427 SANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 486

Query: 368 SVIQFTKLWSAVEGTSSPNYAATCDAMPRAPSPHPKY 478
           + +      SA   +S+P  +A         S  P Y
Sbjct: 487 TPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/92 (20%), Positives = 37/92 (40%)
 Frame = +2

Query: 203 SISVDTVTATKLSTGWTRTK*EASTLTLIQSSRCTSRSKPPATDI*CSLKSLILASVIQF 382
           S S   +++   +   T T   ++ L+ + S+  TS S  P T +  +  +   ++ +  
Sbjct: 318 SASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTS 377

Query: 383 TKLWSAVEGTSSPNYAATCDAMPRAPSPHPKY 478
               SA   +S+P  +A         S  P Y
Sbjct: 378 VNSTSATSASSTPLTSANSTTSTSVSSTAPSY 409


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 668 PGIGQSYKNLASTPFQAAKLK----YFTDNGSTSLKLI 567
           PGIG +YKN+ S  F   K +    +F    S  LK+I
Sbjct: 260 PGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 620 PGTALKPNSCTTALYPETRLLKTSLTPTQKSPS 718
           P T  KP++ T+   P T    TS+T    SPS
Sbjct: 128 PPTDNKPSASTSTAVPTTEARNTSITEPANSPS 160


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 353 SLILASVIQFTKLWSAVEGTSSPNYAATC-DAMPRAPSP 466
           S+ L   I F  L SAV G+ S +Y  TC + +PRA  P
Sbjct: 7   SVFLFLHIVFYSLLSAVNGSPSLDYFETCSNFVPRAGIP 45


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 586 DPLSVKYFSFAAWNGVEAKFL 648
           DPL +K F F  W+  E  FL
Sbjct: 686 DPLDIKMFKFTHWSYSEENFL 706


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 295  RLNEGQR*CFSFR-SRPPGRKFRSCNRVYRYALYSASHLCN 176
            +L EGQ     +   R   RKF+ C  + RYA ++A  + N
Sbjct: 1016 QLFEGQMDVLEYELDRMASRKFKMCVSMQRYAKFTADEIEN 1056


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 629 ALKPNSCTTALYPETRLLKTSLTPTQKSPS*LLRTS 736
           A KPNS T+  +P++   +T    T   PS  +RTS
Sbjct: 447 AAKPNSPTSTFFPQSSFGQTIAKNTMDKPS-AVRTS 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,341
Number of Sequences: 5004
Number of extensions: 64577
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)