Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l04
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   0.30 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   1.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   2.1  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   2.8  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   3.7  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   4.8  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    24   6.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   6.4  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   6.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   8.5  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    23   8.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    23   8.5  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    23   8.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    23   8.5  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 316 FFFPYSLFYYKTLASRYPPAQSSASSNKRLAFFSI-ISSLHFLHAATLLQPLVEYSASQE 140
           F  P SLF      +  P ++SS+  +K+ +  S  + S   L   T   PL+   + + 
Sbjct: 39  FMDPVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQES 98

Query: 139 LHWSMKFTKVTSAI 98
            HW+++   + SA+
Sbjct: 99  SHWTIRHESMPSAL 112



 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 316 FFFPYSLFYYKTLAS 272
           FF+PYS FY+  L+S
Sbjct: 612 FFWPYSQFYFCILSS 626


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 86  NLILSISCTQYKHLFNIFWLMLRVGQ 9
           NL  ++S TQYK L+N++ +  + G+
Sbjct: 542 NLPSNLSDTQYKKLYNLYLVEFKAGR 567


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 209 QQSSFFACSYPVTTISRIFCLSGTALVHEVYQSDFSYS*TNNLILSISCT 60
           +QSSF +   P+        LS  ALV E     +SYS TN ++   S T
Sbjct: 254 RQSSFISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFT 303


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 276 HHGILQPSHQHHQTKDLHSSP 214
           H G+L P HQH     + +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 84  IICSGIAEVTLVNFMDQCSS*EAEYSTNGCNRVAAC 191
           I+     EV   N MD+C +  +E    GC+ +  C
Sbjct: 252 IVARQSLEVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 224 ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 132
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 84  IICSGIAEVTLVNFMDQCSS*EAEYSTNGCNRVAAC 191
           I+     E    N MD C + + E +  GC+ +  C
Sbjct: 249 IVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVC 284


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 200 KTADNGEECKSFV 238
           K A+NG +C+SFV
Sbjct: 238 KVAENGADCRSFV 250


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 313 FFPYSLFYYKTLASRYP 263
           FFPYSL  +K L   YP
Sbjct: 317 FFPYSLIGHKELRFVYP 333


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 199 HFLHAATLLQPLVEYSASQELHWSMKFTKVTSAIPEQ 89
           H  +   L+QPL+EYS S  +  S  FT  ++  P +
Sbjct: 89  HEYNVFDLIQPLIEYSGSAFMPMS-TFTPQSNRKPTE 124


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 300 HCFI--TKL*HHGILQPSHQHHQTKDLHS 220
           HC I  T+   HGI  P + H Q  D HS
Sbjct: 80  HCAISHTRWATHGIPSPINCHPQRSDPHS 108


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 316 FFFPYSLFYYKTLAS 272
           FF+PY+ F++ TL S
Sbjct: 537 FFWPYAGFHFSTLVS 551


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  IDKIRLFVQE*LKSLW*TSWTNAVPE 147
           ++K+ L + + LK  W  +W N +PE
Sbjct: 115 LNKLDLTLVQILKQEWPHNWPNFIPE 140


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 208 SSLHFLHAATLLQPLVEYSASQELHW 131
           S  H LHA TL    VEY+  + L W
Sbjct: 239 SIFHVLHAFTLFDTTVEYNI-EPLLW 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,389
Number of Sequences: 5004
Number of extensions: 25028
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)