Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l04
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342...    27   3.2  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    26   5.6  
01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748...    26   7.4  
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509...    25   9.7  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    25   9.7  

>08_01_0387 -
           3426058-3426168,3426279-3426473,3426612-3426724,
           3427121-3427157,3427270-3427341,3427849-3427962,
           3428129-3428200,3428343-3428381,3429340-3429414,
           3429561-3429674,3429749-3429813,3429927-3430047,
           3430942-3431063,3431547-3431634
          Length = 445

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 210 IMEKNASLLFDDADDWAGGYR 272
           +++K  S  FDDADD  G YR
Sbjct: 369 LLDKKTSSEFDDADDEVGRYR 389


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 276 HHGILQPSHQHHQ 238
           HH +L PSH HH+
Sbjct: 13  HHRVLLPSHHHHR 25


>01_02_0053 +
           10673264-10674510,10674552-10674576,10674802-10674886,
           10675074-10675084
          Length = 455

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 307 PYSLFYYKTLASRYPPAQSSASSNKRL-AFFSIISSLHFLHAATLLQPLVE 158
           P  L  Y TL S  PP    AS +  L +F    S  H LH+  L   L +
Sbjct: 85  PTFLRRYPTLLSVSPPPNPVASPSPHLLSFLEFASRHHALHSPLLASRLAK 135


>03_06_0643 +
           35248597-35250585,35250663-35250773,35250867-35250971,
           35252215-35252304
          Length = 764

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 264 LQPSHQHHQTKDLHSSPLSAVFI 196
           +Q SH HH    LH S    VFI
Sbjct: 716 VQSSHPHHYGNQLHPSNTMQVFI 738


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 276 HHGILQPSHQHHQTKD-LHSSPLSAVFIFCMQLPCY 172
           HHG     H HH  +D  HS+P  A   + +  P Y
Sbjct: 350 HHGHHHHHHHHHGHEDSRHSAPAQAPVHYPVHEPRY 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,032,476
Number of Sequences: 37544
Number of extensions: 142608
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)