Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23l04
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.29 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.67 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.67 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.67 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.67 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.67 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.67 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.67 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.67 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   2.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   3.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   4.7  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   4.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   4.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   8.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   8.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 306 HIHCFITKL*HHGILQPSHQHHQTKDLHSSPLSAVFI 196
           H H   T   HH      H  H T   HSS  +A+ I
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQI 459



 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+  D H        +F   LPC
Sbjct: 319 HHRNADTHEMSEWVKVVFLYWLPC 342


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 HHQTKDLHSSPLSAVFIFCMQLPC 175
           HH+T D +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 196 FLHAATLLQPLVEYSASQELHWSMKFT 116
           FLH  T    LV  S    + + M+FT
Sbjct: 130 FLHDVTERNKLVRLSGDGSVTYGMRFT 156


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   TRSVQLVTLTRIY*INVYIEYSLSIR*DYLFR 97
           TRS ++  ++RI+   V+  ++L+    YLFR
Sbjct: 410 TRSKRIDVISRIFFPIVFAFFNLAYWSTYLFR 441


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   TRSVQLVTLTRIY*INVYIEYSLSIR*DYLFR 97
           TRS ++  ++RI+   V+  ++L+    YLFR
Sbjct: 410 TRSKRIDVISRIFFPIVFAFFNLAYWSTYLFR 441


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 10  CPTRNINQNILNKCL 54
           CPTRN+ + I  +CL
Sbjct: 261 CPTRNVKEMI--RCL 273


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 10  CPTRNINQNILNKCL 54
           CPTRN+ + I  +CL
Sbjct: 132 CPTRNVKEMI--RCL 144


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 10  CPTRNINQNILNKCL 54
           CPTRN+ + I  +CL
Sbjct: 261 CPTRNVKEMI--RCL 273


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 190 HAATLLQPLVEYSAS 146
           H   +++PL+E+SA+
Sbjct: 4   HLKNIMKPLMEFSAT 18


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 128 HEVYQS-DFSYS*TNNLILSISCTQYKHLF 42
           H++  S   +Y+  NN    + C  YK L+
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 128 HEVYQS-DFSYS*TNNLILSISCTQYKHLF 42
           H++  S   +Y+  NN    + C  YK L+
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 252 HQHHQTKDL 226
           H HHQT+ L
Sbjct: 353 HHHHQTQSL 361


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 61  VQLIDKIRLFVQE 99
           ++L DKIR+F+ E
Sbjct: 77  LRLFDKIRVFLDE 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,411
Number of Sequences: 438
Number of extensions: 1569
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)