Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23k23
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    32   0.083
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    29   0.58 
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    29   0.58 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   1.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   1.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.0  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    27   3.1  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   4.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   9.5  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   9.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   9.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.5  

>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = +2

Query: 317  QLMTCINRIRNSDNQYECSGDSRCIDLPNGTGQQVFKHADDDISYNSG-QLVCDNFEIIS 493
            +L TC    +   N  EC    R   L    G   F+HAD D++Y S  +       +IS
Sbjct: 1802 RLSTCYKCGKADHNLRECKLRIRFQGLCLFCGLTKFEHADSDMAYTSDCRSWARKANLIS 1861

Query: 494  NIECDQSNVFENKLFMDKFRLNMQFPTEVFDGTACVPATADN 619
             +    +NV   +   DKF L      + F G  C   T ++
Sbjct: 1862 LVYYAWNNVQYRRTIADKF-LQGDVRDQAFYGFVCCSTTTNS 1902


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 251 HTYITADISDAQYFKCLNNNESQLMTCINRIRNSDN 358
           H Y+   +S +Q    +++ E +L  C+NR  + DN
Sbjct: 445 HNYLNEKLSPSQAMVIISHYEDELPACVNRRAHIDN 480


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 11  ECPDNYTFDAKTRQCKVNEL-CENRPDGYILSYFPSNLLVNQFMQCVSGR-HVVRECP 178
           +CPD  + +  T  C   +  C+N   GYI SY PSN + +    C  G    + +CP
Sbjct: 66  DCPDG-SDEPGTSACHNGKFFCKNT--GYISSYIPSNRVDDTVCDCCDGSDESLIKCP 120


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +2

Query: 428  HADDDISYNSGQL----VCDNFEIISNIECD--QSNVFENKLFMDKFRLNMQFPTEVFDG 589
            +   D+S +S  L      D FEI  +++ D  +SNVF   L +   RLN+ F T     
Sbjct: 2567 YPSSDVSKDSASLSKNAFADKFEI-PDLDADVYRSNVFFETLHLQPTRLNISFETSYESD 2625

Query: 590  TACVPATADNVNFL 631
               V ++   ++F+
Sbjct: 2626 QPAVKSSNPTLDFM 2639


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +2

Query: 317  QLMTCINRIRNSDNQYECSGDSRCIDLPNGTGQQVFKHADDDISYNSG-QLVCDNFEIIS 493
            +L TC    +   N  EC    R   L    G   F+HAD D++Y S  +       +IS
Sbjct: 1802 RLSTCYKCGKADHNLRECKLRIRFQGLCLFCGLTKFEHADSDMAYTSDCRSWARKANLIS 1861

Query: 494  NIECDQSNVFENKLFMDKF 550
             +    +NV   +   DKF
Sbjct: 1862 LVYYAWNNVQYRRTIADKF 1880


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 152 GRHVVRECPANKIFDRNLMSCVEA---HPCTFNGAGHTYITADISDAQ 286
           G +V+     N ++ R  M+   A   H C +NG+  +Y T D+S AQ
Sbjct: 501 GMYVLDNSANNYLYGRQAMNSARAWYIHGC-YNGSATSYPTVDLSPAQ 547


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 365 ECSGDSRCIDLPNGTGQQVFKHADDDISYNSGQLVCDNFEI 487
           EC G S  +   +    Q  K A   I YNSGQ+   N  I
Sbjct: 263 ECGGKSPFLVFEDADLDQAVKWAALGIMYNSGQICTSNSRI 303


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 305 NNESQLMTCINRIRNSDNQYECSGDSRCI 391
           N+  QL++CI R+ +   ++E  GD   +
Sbjct: 687 NSSIQLLSCIKRLNDDVKRFERGGDDNAL 715


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 176  PANKIFDRNLMSCVEAHPCTFNGAG 250
            PA  +F   L+ C ++H C+FNG G
Sbjct: 1839 PAICLFCGKLL-CFQSHCCSFNGIG 1862


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 90  PSGLFSHNSLTLHWR 46
           PSG++ +N L L+WR
Sbjct: 451 PSGIYRYNKLGLNWR 465


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 278 DAQYFKCLNNNESQLMTCI 334
           DA+  KC++NN S ++ C+
Sbjct: 284 DAEVQKCIDNNISSMLACM 302


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 143 CVSGRHVVRECPANKIFDRNLMSCVEAHP 229
           C    H+V E PA+K     L  CV   P
Sbjct: 632 CTVENHIVTESPAHKSNKAQLFVCVPTTP 660


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 372 EHSYWLSEFLIRFMHVISCDSLLFKHLKYCASLISAVMYVCPAPLNVHGCASTHDIK 202
           EH   L + L   +H++S  SL +    +CAS++  V+     PL      S  D+K
Sbjct: 249 EHQLILYDTLTFVVHLLSQKSLPYSLTTFCASIL--VLSFFQLPLFADHFLSALDVK 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,717
Number of Sequences: 5004
Number of extensions: 58465
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)