Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23k23
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    31   1.1  
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205...    29   2.4  
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977...    29   3.2  
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891...    27   9.8  

>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 372 EH-SYWLSEFLIRFMHVISCDSLLFKHLKYCASLISA 265
           EH ++W S +  +F+ ++ C ++L+KH K+C +L+ A
Sbjct: 613 EHDNFWNSRWTRKFLFLL-CLAVLWKHWKHCRALVKA 648


>11_08_0004 +
           27518384-27519018,27519147-27519397,27520437-27520559,
           27523499-27524529
          Length = 679

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 230 CTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYECSGDSRCIDLPNGT 409
           C+   AG+ Y+T          C+N NE +L       R    +Y C G SRC D   G 
Sbjct: 280 CSTGYAGNPYVTGG--------CININECELR------REEPTKYPCYGGSRCYDTEGGY 325

Query: 410 GQQV-FKHADDDISYNSGQL 466
             +  F H  D  +   G L
Sbjct: 326 KCKCRFPHRGDATAVAGGIL 345


>09_04_0472 -
           17895285-17896459,17897113-17897271,17897374-17897794,
           17898520-17898552,17898902-17899384
          Length = 756

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 323 MTCINRIRNSDNQYEC-SGDSRCIDLPNG 406
           M   +R++ +   Y C SG SRC+D P G
Sbjct: 263 MDSCDRVKRNTTSYACISGKSRCVDDPKG 291


>04_03_0685 +
           18687520-18687787,18688637-18688725,18689102-18689195,
           18689237-18689304,18690300-18690383,18690458-18690745,
           18691474-18691626
          Length = 347

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 210 DIKLRSNILFAGHSRTTWRPLTHCIN-WLTSKLEGKYDSI*PSGLFSHNS 64
           D KLR       HS+      +  +   LTSKL G+Y ++ P GLF   S
Sbjct: 151 DFKLRKANTLCRHSKQHCYIFSKFLTPLLTSKLAGQYVAVDPMGLFVSTS 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,659
Number of Sequences: 37544
Number of extensions: 375047
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)