Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23k23
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 33 0.18
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 31 0.54
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 31 0.71
AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical ... 31 0.71
Z32840-2|CAD91625.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 30 1.2
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 30 1.2
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 30 1.6
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 30 1.6
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 29 2.2
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 2.9
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 2.9
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 29 2.9
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 2.9
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 29 2.9
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 2.9
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 2.9
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL132948-11|CAC51063.1| 208|Caenorhabditis elegans Hypothetical... 29 3.8
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 28 6.6
U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin pr... 27 8.7
U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin pr... 27 8.7
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 33.1 bits (72), Expect = 0.18
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Frame = +2
Query: 59 VNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVR---ECPAN-KIFDRNLM---SCV 217
+N +C+ G+ Y P +L + +C G + R ECP D+ + +
Sbjct: 590 INGICK----GFTFVY-PGDLCTDITSRCTGGSYCARGRCECPPRMSAIDKKCVHQQTAA 644
Query: 218 EAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINR----IRNS-DNQYECSGDS 382
PC+ A + + + KC+NN + C+ R I NS +N+ +C G+S
Sbjct: 645 PGEPCSEKVACSPF---SVCENNVCKCVNNMMIRDKMCVQRRKVNIGNSCNNEDQCLGNS 701
Query: 383 RCID 394
C+D
Sbjct: 702 TCMD 705
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 33.1 bits (72), Expect = 0.18
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Frame = +2
Query: 59 VNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVR---ECPAN-KIFDRNLM---SCV 217
+N +C+ G+ Y P +L + +C G + R ECP D+ + +
Sbjct: 590 INGICK----GFTFVY-PGDLCTDITSRCTGGSYCARGRCECPPRMSAIDKKCVHQQTAA 644
Query: 218 EAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINR----IRNS-DNQYECSGDS 382
PC+ A + + + KC+NN + C+ R I NS +N+ +C G+S
Sbjct: 645 PGEPCSEKVACSPF---SVCENNVCKCVNNMMIRDKMCVQRRKVNIGNSCNNEDQCLGNS 701
Query: 383 RCID 394
C+D
Sbjct: 702 TCMD 705
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 NQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 223
NQF+ CV+G + +CP + +F+ C E+
Sbjct: 113 NQFISCVAGGAYMAKCPDSLVFNERTQDCRES 144
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 47 RQCKVNELCENRPDGYILSYFPSNLLVNQFMQCV-SGRHVVRECPANKIFDRNLMSCVE 220
RQ +VN+ C+ L++ +QF+ C +G + + CP + FD+ L SC E
Sbjct: 561 RQAQVNKDCQQYTTPTFLTFGDC---FDQFIFCSGNGINRMAACPIGETFDKTLRSCSE 616
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 134 FMQCVSGRHVVRECPANKIFDRNLMSC 214
F +CV GR VV CP+ +F+ L C
Sbjct: 1261 FYRCVWGRKVVMTCPSGTVFNPLLSVC 1287
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 128 NQFMQCVSGRHVVRECPANKIFDRNLMSCV 217
++F +C + ++CP N +F+ +L+ CV
Sbjct: 320 SRFNRCQNNSVRSKQCPVNTLFESSLVMCV 349
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 110 PSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAHPC 232
P V +++C +V + C K+FD + CV C
Sbjct: 1039 PVGFCVRTYLECTDAGNVEKLCRIGKLFDSHSNRCVPRIGC 1079
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 71 CENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 226
C N DG +P +F+ CVSG +CP + ++ +NL C H
Sbjct: 25 CTNVGDGM----YPLGACEPRFLACVSGEARYMDCPEDLVYHKNLEFCDWRH 72
Score = 30.7 bits (66), Expect = 0.94
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Frame = +2
Query: 14 CPDNYTFDAKTRQCKVN---ELCENRPDGYILSYFPSNLLVN---------------QFM 139
CPD F K + C + C+ G++ +Y S L + +
Sbjct: 268 CPDGLMFSEKNQMCDYEWNVDECDLESSGFMENYKASEALTPCTNMDNGLYALDCTPRVL 327
Query: 140 QCVSGRHVVRECPANKIFDRNLMSC 214
C +GR + ECP + +F+ N + C
Sbjct: 328 SCQNGRENIFECPPSLVFNENSLIC 352
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 128 NQFMQCVSGRHVVRECPANKIFDRNLMSC 214
N F C G R CPAN +F+ + SC
Sbjct: 192 NVFFSCSEGIAHRRNCPANLVFNPAISSC 220
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +2
Query: 5 VEECPDN---YTFDAKTRQCKVNEL--CENRPDGYILSYFPSNLLVNQFMQ--CVSGRHV 163
+ +C +N Y ++A+TRQC++ E C+ + + N N + C+ G+
Sbjct: 532 IGDCTENVKRYWYNARTRQCQMFEYTGCQGNDNNFDSIMDCQNFCKNAIPEPKCIQGQ-A 590
Query: 164 VRECPANKIFDRNLMSCVEAHPCTFNGA 247
++ N + N M C + C F+G+
Sbjct: 591 YKDMFGNFVTCSNGMGCPANYECYFDGS 618
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +2
Query: 8 EECPDNYTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQ----FMQCVSGRHVVREC 175
E+C D + + K ++ C + +L P L+ + F++CV R V+REC
Sbjct: 14 EDCIDRPCVECR-HYIKQDDPCLHHGTKPMLFCDPQTNLIQESSTNFLECVQNRWVLREC 72
Query: 176 PANKIFDRNLMSCVE 220
I++ CV+
Sbjct: 73 VTGTIYESG-RGCVD 86
>AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical
protein Y37F4.6 protein.
Length = 384
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 194 DRNLMSCVEAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYE 367
DR L+ +A+PC ++ H++ D D + ++ +L C NR N D+ E
Sbjct: 48 DRKLLKKNQAYPCPWDDCPHSF--QDPQDMRIHYMFDHESVKLFCCGNRFENYDSFLE 103
>Z32840-2|CAD91625.1| 160|Caenorhabditis elegans Hypothetical
protein C07G2.1b protein.
Length = 160
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 QFMQCVSGRHVVRECPANKIFDRNLMSC 214
QF+ C G + +CPA+ I+D +++C
Sbjct: 77 QFLTCSGGISRIMDCPADLIYDPRIVAC 104
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 QFMQCVSGRHVVRECPANKIFDRNLMSC 214
QF+ C G + +CPA+ I+D +++C
Sbjct: 77 QFLTCSGGISRIMDCPADLIYDPRIVAC 104
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +2
Query: 35 DAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSC 214
D + V + C + DG+ + + + C +G + +CPA FD + C
Sbjct: 202 DEPVTRSAVTKSCVGKADGF----YSFGECSDHYTACSNGYLIPMQCPARLAFDEARVIC 257
Query: 215 ---VEAHPCTFNGAGHTYITAD 271
+ CT NG+G+ +AD
Sbjct: 258 DYVMNVPECT-NGSGNDEGSAD 278
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 QFMQCVSGRHVVRECPANKIFDRNLMSC 214
QF+ C G + +CPA+ I+D +++C
Sbjct: 77 QFLTCSGGISRIMDCPADLIYDPRIVAC 104
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +2
Query: 35 DAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSC 214
D + V + C + DG+ + + + C +G + +CPA FD + C
Sbjct: 202 DEPVTRSAVTKSCVGKADGF----YSFGECSDHYTACSNGYLIPMQCPARLAFDEARVIC 257
Query: 215 ---VEAHPCTFNGAGHTYITAD 271
+ CT NG+G+ +AD
Sbjct: 258 DYVMNVPECT-NGSGNDEGSAD 278
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 44 TRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 223
+ C C++ P GYI S + + V+ GR AN+ D++L SC E
Sbjct: 335 SHDCSHQAACQDTPTGYICSCNSNCIDVSSRYNLPPGRKC--SVAANQCSDKSLNSCDEN 392
Query: 224 HPCTFNGAGHT 256
C G+T
Sbjct: 393 ADCVQLPDGYT 403
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 44 TRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 223
+ C C++ P GYI S + + V+ GR AN+ D++L SC E
Sbjct: 335 SHDCSHQAACQDTPTGYICSCNSNCIDVSSRYNLPPGRKC--SVAANQCSDKSLNSCDEN 392
Query: 224 HPCTFNGAGHT 256
C G+T
Sbjct: 393 ADCVQLPDGYT 403
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 29.5 bits (63), Expect = 2.2
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Frame = +2
Query: 20 DNYTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQ-FMQCVSGRHVVRECPANKIFD 196
D T + + + +N C R G Y + N+ + QC +G +R+CP +++
Sbjct: 97 DRVTLNVRQKAVSIN--CVGRLSG---DYALDKTVCNENYYQCANGISYMRKCPYQQVYV 151
Query: 197 RNLMSCVEAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYEC-- 370
L C C +G D + A Y ++++ ++T N N +C
Sbjct: 152 PILKRCDYHTNCNASGG-----VKDQAAAAYASPTYDSDNYIVT-TKEFENGHNGLDCKV 205
Query: 371 SGDSRCID 394
+GD D
Sbjct: 206 TGDMHFTD 213
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 128 NQFMQCVSGRHVVRECPANKIFDRNLMSC 214
++++QCV+ + CP FDR L C
Sbjct: 56 SKYLQCVNNVEYEQSCPEGLYFDRLLARC 84
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 56 KVNELC-ENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAHPC 232
+++ +C E P I ++ L+ N + +G H V+ECP + + ++ CV H C
Sbjct: 286 ELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNHCVKECPPELLIENDV--CVR-H-C 341
Query: 233 TFNGAGHTY-ITADISDAQYFKCLNNNESQLMTCINRIRN 349
+ GH Y T D+ + + KC +++ ++ T + N
Sbjct: 342 S---DGHHYDATKDVRECE--KCRSSSCPKICTVDGHLTN 376
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +2
Query: 26 YTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGR---HVVRECPANKIFD 196
Y+ +K C N +C NR D Y P + ++ + GR ++ EC ++
Sbjct: 488 YSACSKRNTCDKNAICLNRFDSYTCQCRPGYIDLSADLTNAPGRICKELINECASSDNEC 547
Query: 197 RNLMSCVEA---HPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYE 367
C++A + C G +++ + +C N+N C + N+
Sbjct: 548 SPYARCIDATNGYACQCLD-GFIDVSSRYNKPPGRQCTNSNNE----CSEKSLNT----- 597
Query: 368 CSGDSRCIDLPNG 406
C ++ C+D P+G
Sbjct: 598 CDENADCVDTPDG 610
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +2
Query: 26 YTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGR---HVVRECPANKIFD 196
Y+ +K C N +C NR D Y P + ++ + GR ++ EC ++
Sbjct: 1072 YSACSKRNTCDKNAICLNRFDSYTCQCRPGYIDLSADLTNAPGRICKELINECASSDNEC 1131
Query: 197 RNLMSCVEA---HPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYE 367
C++A + C G +++ + +C N+N C + N+
Sbjct: 1132 SPYARCIDATNGYACQCLD-GFIDVSSRYNKPPGRQCTNSNNE----CSEKSLNT----- 1181
Query: 368 CSGDSRCIDLPNG 406
C ++ C+D P+G
Sbjct: 1182 CDENADCVDTPDG 1194
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +2
Query: 26 YTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGR---HVVRECPANKIFD 196
Y+ +K C N +C NR D Y P + ++ + GR ++ EC ++
Sbjct: 488 YSACSKRNTCDKNAICLNRFDSYTCQCRPGYIDLSADLTNAPGRICKELINECASSDNEC 547
Query: 197 RNLMSCVEA---HPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYE 367
C++A + C G +++ + +C N+N C + N+
Sbjct: 548 SPYARCIDATNGYACQCLD-GFIDVSSRYNKPPGRQCTNSNNE----CSEKSLNT----- 597
Query: 368 CSGDSRCIDLPNG 406
C ++ C+D P+G
Sbjct: 598 CDENADCVDTPDG 610
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +2
Query: 26 YTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGR---HVVRECPANKIFD 196
Y+ +K C N +C NR D Y P + ++ + GR ++ EC ++
Sbjct: 1072 YSACSKRNTCDKNAICLNRFDSYTCQCRPGYIDLSADLTNAPGRICKELINECASSDNEC 1131
Query: 197 RNLMSCVEA---HPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYE 367
C++A + C G +++ + +C N+N C + N+
Sbjct: 1132 SPYARCIDATNGYACQCLD-GFIDVSSRYNKPPGRQCTNSNNE----CSEKSLNT----- 1181
Query: 368 CSGDSRCIDLPNG 406
C ++ C+D P+G
Sbjct: 1182 CDENADCVDTPDG 1194
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 56 KVNELC-ENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAHPC 232
+++ +C E P I ++ L+ N + +G H V+ECP + + ++ CV H C
Sbjct: 286 ELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNHCVKECPPELLIENDV--CVR-H-C 341
Query: 233 TFNGAGHTY-ITADISDAQYFKCLNNNESQLMTCINRIRN 349
+ GH Y T D+ + + KC +++ ++ T + N
Sbjct: 342 S---DGHHYDATKDVRECE--KCRSSSCPKICTVDGHLTN 376
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 104 YFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSC 214
YF + F C +GR +V CPA F + + C
Sbjct: 314 YFSFGQCSSSFTACTNGRAIVMFCPAGLKFSESTVRC 350
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 131 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 226
QF+ C G + +CPA+ I++ L+ C H
Sbjct: 40 QFLTCSGGIARIMDCPADLIYNEPLLICDWRH 71
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 56 KVNELC-ENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAHPC 232
+++ +C E P I ++ L+ N + +G H V+ECP + + ++ CV H C
Sbjct: 337 ELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNHCVKECPPELLIENDV--CVR-H-C 392
Query: 233 TFNGAGHTY-ITADISDAQYFKCLNNNESQLMTCINRIRN 349
+ GH Y T D+ + + KC +++ ++ T + N
Sbjct: 393 S---DGHHYDATKDVRECE--KCRSSSCPKICTVDGHLTN 427
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 104 YFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSC 214
YF + F C +GR +V CPA F + + C
Sbjct: 314 YFSFGQCSSSFTACTNGRAIVMFCPAGLKFSESTVRC 350
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 131 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 226
QF+ C G + +CPA+ I++ L+ C H
Sbjct: 40 QFLTCSGGIARIMDCPADLIYNEPLLICDWRH 71
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +2
Query: 26 YTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGR---HVVRECPANKIFD 196
Y+ +K C N +C NR D Y P + ++ + GR ++ EC ++
Sbjct: 1072 YSACSKRNTCDKNAICLNRFDSYTCQCRPGYIDLSADLTNAPGRICKELINECASSDNEC 1131
Query: 197 RNLMSCVEA---HPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYE 367
C++A + C G +++ + +C N+N C + N+
Sbjct: 1132 SPYARCIDATNGYACQCLD-GFIDVSSRYNKPPGRQCTNSNNE----CSEKSLNT----- 1181
Query: 368 CSGDSRCIDLPNG 406
C ++ C+D P+G
Sbjct: 1182 CDENADCVDTPDG 1194
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
C49C3.4 protein.
Length = 1566
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 257 YITADISDAQYFKCLNNNESQLMTCINRIRNSDNQYECSGDSRCIDLPNGT 409
+++ D S Q F+C N C ++++S+ Y+CSG S + P G+
Sbjct: 1025 FVSNDFSVTQSFQCRPGN-GPTDNC--KLKDSNGNYQCSGTSPFMRGPEGS 1072
>AL132948-11|CAC51063.1| 208|Caenorhabditis elegans Hypothetical
protein Y39B6A.13 protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 399 GKSMHLESPEHSYWLSEFLIRFMHV---ISCDSLLFKHLKYCASLISAVMYVCPAPLN 235
GK ++ E+P+ S +FL +F+H + D F + + +I CP +N
Sbjct: 57 GKEVNRENPQISAQFPDFLFKFLHAFQFLPSDQQTFANSMFLLKIIDLFGSECPKIIN 114
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 104 YFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSC 214
Y P F QC SG R C I+D++ ++C
Sbjct: 165 YKPDVYNCKNFYQCASGLWTQRSCGEGTIWDQHKLTC 201
>U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin
protein 1, isoform b protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 218 EAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSD 355
E+ TFNG +Y+ + D +N++ + +CINR+R D
Sbjct: 205 ESTGTTFNGIMQSYVPRIVPDEP------DNDTDVESCINRLREDD 244
>U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin
protein 1, isoform a protein.
Length = 392
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 218 EAHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSD 355
E+ TFNG +Y+ + D +N++ + +CINR+R D
Sbjct: 196 ESTGTTFNGIMQSYVPRIVPDEP------DNDTDVESCINRLREDD 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,981
Number of Sequences: 27780
Number of extensions: 348027
Number of successful extensions: 1064
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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