Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23k23
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 266 ADISDAQYFKCLNNNESQLMTCINRIRNSDNQYECSG 376
           A +SD+ Y    +N++SQ  +  +  RNS N+ E SG
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNS-NRSESSG 45


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 266 ADISDAQYFKCLNNNESQLMTCINRIRNSDNQYECSG 376
           A +SD+ Y    +N++SQ  +  +  RNS N+ E SG
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNS-NRSESSG 45


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 420 TCWPVPLGKSMHLESP 373
           TC+ +PL   MH++ P
Sbjct: 322 TCFTMPLLDKMHIDDP 337


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = +2

Query: 290 FKCLNNNESQLMTCINRIRNSDNQYECSGDSRCIDLPNGTGQQVFKHADDDISYNSGQLV 469
           F+CL NN +  +T ++ + N   Q++   ++    +   T + +  H   D    +  LV
Sbjct: 160 FRCLGNNLTAFLTTLDGV-NDVVQHQSGSEAEAEFVCIATPEAIELHFTTDHPSVAYLLV 218

Query: 470 CDNFEIISNIECDQSNVF-ENKLFMDKFRLNMQFPTEVFDGTACVPATADNV 622
                I      D +NV+     +  KF    +   E++     VP   DN+
Sbjct: 219 GSLKGIARQFYNDDANVYILPDPYNTKF-FRYRITPELYSEHLVVPEIEDNL 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,448
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)