Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23k09
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 166 3e-42
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 28 1.2
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 2.7
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 3.6
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 6.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 8.4
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 8.4
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 25 8.4
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 166 bits (403), Expect = 3e-42
Identities = 82/177 (46%), Positives = 118/177 (66%), Gaps = 2/177 (1%)
Frame = +1
Query: 100 MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 273
MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+T+ + +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 274 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 453
VL+TLT D G+ +S +H + G+ GI+IA LALKHR+ K + RIV FVGSP+
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 454 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVP 624
DEK L++LAKR+KK V D++ GE +N L F++ N D+ HLVS+P
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGE-LQNESALQHFIDAANSSDS----CHLVSIP 172
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 160 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 324
F P+RL + V L S + + EN++ + L N +L + + R + KLH
Sbjct: 664 FDPSRLLIFKGVVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLH 718
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 502 VNCDVVSFGEDSENNPLLTTFVNTLNG 582
VN ++VS ED++ L TF+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 436 GSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 579
GS ++ DE + +++ N D+++F +N PLLT +++L+
Sbjct: 4 GSKLSEDETFSQTFNEEEQEDSRNKDILAFDPSVDNEPLLTKKLSSLS 51
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 220 TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 333
T + P+N+ V +L E++ATLT + + ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 535 SENNPLLTTFVNTLNGKDTSTGGSHLVSVP 624
S++NP F N+L G D T GS + P
Sbjct: 93 SKDNPQNNDFTNSLQGLDFGTFGSRIQREP 122
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 94 YFFSRLIFIKANTTVVNSIRTMNKNCCII 8
Y FSR I++KA ++N + + C+I
Sbjct: 765 YTFSRSIYVKAMRDLLNEAKIQIMHACLI 793
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -1
Query: 636 TASSWHRHKVTSP--SRCVFPI 577
TA+SWH HK P S V P+
Sbjct: 224 TATSWHAHKFLDPAESGAVIPV 245
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = +1
Query: 400 GKNHKMRIVVFVGSPVNTD------EKELVKLAKRLKKEKVNCDVVS 522
G H R+ V S N D EKELV A + + +K N VVS
Sbjct: 56 GNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVS 102
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 475 LAKRLKKE-KVNCDVVSFGEDSE----NNPLLTTFVNTLNGKDTSTGGSHL 612
L+K++K+ KVN +SFGED E + PL GKD S S L
Sbjct: 57 LSKKVKQGIKVNKGKLSFGEDEELENDDLPLKKVEKKMFMGKDPSADTSFL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,334
Number of Sequences: 5004
Number of extensions: 60749
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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