Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23k09
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...   151   4e-37
01_06_0065 + 26107522-26107700,26110875-26111253                       29   5.0  
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666...    28   6.6  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score =  151 bits (367), Expect = 4e-37
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
 Frame = +1

Query: 106 LESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 279
           LE+T+ICVD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 280 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 459
              TSD  + ++ +H ++ +G+ NL   + IA L LK+R  K    RIVVFVGSPV  DE
Sbjct: 65  LAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVK-DE 123

Query: 460 KELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG-SHLVSVPAG 630
           K L  + K+LKK  V+ DVV FGE  +  P        L     + GG SH+V +P G
Sbjct: 124 K-LETIGKKLKKYNVSLDVVEFGESDDEKP------EKLEALVAAVGGSSHIVHIPPG 174


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 609 PCVCASWRLCC 641
           PC C +WRLCC
Sbjct: 20  PCPCPAWRLCC 30


>02_02_0089 -
           6668179-6668316,6668386-6668565,6668648-6668729,
           6669317-6669405,6669503-6669580,6670502-6670559,
           6670727-6670956,6671174-6671318,6671417-6671458,
           6671681-6671853
          Length = 404

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 98  LVFFQQTNIY*SEYNGSQFNSYNEQKLL 15
           L FF++ N+Y +    S FNSYN   LL
Sbjct: 256 LAFFEKLNMYSNASLNSLFNSYNPSMLL 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,712,725
Number of Sequences: 37544
Number of extensions: 388879
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)