Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23k09
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-11|AAK66019.1| 346|Caenorhabditis elegans Proteasome r... 228 3e-60
Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81076-7|CAB03058.1| 411|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81076-6|CAB03054.1| 387|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81076-5|CAB03055.1| 389|Caenorhabditis elegans Hypothetical pr... 33 0.21
U29244-19|AAC71098.1| 95|Caenorhabditis elegans Hypothetical p... 29 4.5
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 5.9
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 5.9
Z75952-3|CAB00096.1| 286|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF067211-11|AAK66019.1| 346|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 10 protein.
Length = 346
Score = 228 bits (558), Expect = 3e-60
Identities = 115/192 (59%), Positives = 151/192 (78%), Gaps = 3/192 (1%)
Frame = +1
Query: 100 MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-VEV 276
MV ESTMICVDNS+YMRNGDF PTRLQ+QQDAVNLV K R+NPEN VG+L++AN V+V
Sbjct: 1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQV 60
Query: 277 LATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTD 456
L++L+++ GR+M K H ++P G N + GI+IAHLALKHRQ +NHKMR+V+F+GSP+
Sbjct: 61 LSSLSTEQGRLMMKNHSIEPFGKCNFIAGIKIAHLALKHRQNRNHKMRVVLFIGSPLEEI 120
Query: 457 E-KELVKLAKRLKKEKVNCDVVSFGE-DSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAG 630
E ELVK+AK++KKEKV CDV+ FGE +S+ + +TFV+TLNGK+ S GS L+ VP G
Sbjct: 121 EMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGS--GSSLIVVPQG 178
Query: 631 GCVVLSEALITS 666
L++AL+ S
Sbjct: 179 SS--LTDALLQS 188
>Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical
protein T16H12.4 protein.
Length = 376
Score = 40.3 bits (90), Expect = 0.001
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Frame = +1
Query: 103 VLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEV 276
++ MI +D S +M + P+R A+ NP +GL+T + +
Sbjct: 61 IMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADR 120
Query: 277 LATLTSDVGRIMSKLHRVQP---NGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPV 447
L +T ++ + L+ + GD +L +++A LK G H R VV V S +
Sbjct: 121 LTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPG--HVSREVVLVISAL 178
Query: 448 NT-DEKELVKLAKRLKKEKVNCDVVSFGED 534
+T D + + +K+ + C + +
Sbjct: 179 STIDPGNIYSTIETMKRMNIRCSAIGLSAE 208
>Z81076-7|CAB03058.1| 411|Caenorhabditis elegans Hypothetical
protein F35C5.6 protein.
Length = 411
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +1
Query: 259 LANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGK----NHKMRIV 426
+A++ +L ++ + S L++V + D L GI A L+ + N+K +V
Sbjct: 117 VADLNLLQSIDDLYQSVFSTLNQVSNSDDSFLAKGIGAAENVLQSGRTNGVRSNYKRLVV 176
Query: 427 VFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 540
V+ + E + + +A RLK V V+F +D +
Sbjct: 177 VYASAYKGEGELDPIPVADRLKSSGVVVSTVAFDQDGD 214
>Z81076-6|CAB03054.1| 387|Caenorhabditis elegans Hypothetical
protein F35C5.5b protein.
Length = 387
Score = 33.1 bits (72), Expect = 0.21
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Frame = +1
Query: 244 VGLLTLANVEVLATLTSDVGR------IMSKLHRVQPNG-----DINLLTGIRIAHLAL- 387
VGL+T N E AT+ +D+ R + S + ++ PN D+ L GI A L
Sbjct: 80 VGLVTY-NTE--ATIQADLNRFQSPDDLFSTVFQILPNDLSTSEDVFLAKGIGAAEQLLA 136
Query: 388 ---KHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 540
K+ KN+K ++V+ + + E++ +A+RLK V+ V+F + +
Sbjct: 137 AGRKNNTRKNYKQMVIVYASAYNDEGEEDPRPIAERLKASGVSIATVAFDQTGD 190
>Z81076-5|CAB03055.1| 389|Caenorhabditis elegans Hypothetical
protein F35C5.5a protein.
Length = 389
Score = 33.1 bits (72), Expect = 0.21
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Frame = +1
Query: 244 VGLLTLANVEVLATLTSDVGR------IMSKLHRVQPNG-----DINLLTGIRIAHLAL- 387
VGL+T N E AT+ +D+ R + S + ++ PN D+ L GI A L
Sbjct: 80 VGLVTY-NTE--ATIQADLNRFQSPDDLFSTVFQILPNDLSTSEDVFLAKGIGAAEQLLA 136
Query: 388 ---KHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 540
K+ KN+K ++V+ + + E++ +A+RLK V+ V+F + +
Sbjct: 137 AGRKNNTRKNYKQMVIVYASAYNDEGEEDPRPIAERLKASGVSIATVAFDQTGD 190
>U29244-19|AAC71098.1| 95|Caenorhabditis elegans Hypothetical
protein ZK1248.17 protein.
Length = 95
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 349 NLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFG 528
++ T RI LK++ ++ + G P + KE V LA V+CD +FG
Sbjct: 17 HMTTSTRITSRFLKNKTTNMKRLGVDPPCGVP---EPKEDVLLA-------VSCDAFAFG 66
Query: 529 EDSENNPLLTT-FVNTLNG 582
+D NN +T + NT +G
Sbjct: 67 QDDTNNDRITVEWTNTPDG 85
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 463 ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG 603
+L + +R++K V C + G+ + LT +LNGK T+ GG
Sbjct: 374 KLFESIERIEKGPVVCTDTTHGKPTSLRQALTGAQKSLNGKMTAKGG 420
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 463 ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG 603
+L + +R++K V C + G+ + LT +LNGK T+ GG
Sbjct: 374 KLFESIERIEKGPVVCTDTTHGKPTSLRQALTGAQKSLNGKMTAKGG 420
>Z75952-3|CAB00096.1| 286|Caenorhabditis elegans Hypothetical
protein F55H12.6b protein.
Length = 286
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 289 TSDVGRIMSKLHRVQPNGDIN 351
T+DV R++ K HR+ P IN
Sbjct: 107 TNDVNRVLGKRHRISPTPTIN 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,331,923
Number of Sequences: 27780
Number of extensions: 348036
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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