Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23k09
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    26   0.42 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.2  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.2  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.2  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   5.2  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.8  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 59  YNGSQFNSYNEQKLLYN 9
           +N + +N+YN +KL YN
Sbjct: 313 HNNNNYNNYNNKKLYYN 329


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 77  NIY*SEYNGSQFNSYNEQKLLY 12
           N Y + YN    N+YN  K LY
Sbjct: 332 NNYNNNYNNYNNNNYNNYKKLY 353


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +3

Query: 24  LFIVRIELTTVVFALINISLLKKY*NGLRKYYDLCGQ**LHEKWRFLADTTASSAGCC 197
           LFI+ +++   V+A I +     + N   KY ++     L+ + +   D    +  CC
Sbjct: 89  LFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCC 146


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/38 (26%), Positives = 14/38 (36%)
 Frame = +1

Query: 490 KKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG 603
           KK+  +CD + +       PL T  V          GG
Sbjct: 565 KKQPSDCDTLEYRNGEVTTPLFTPAVGVAAASAGGAGG 602


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYN 9
           + YN S +N+ N ++L YN
Sbjct: 87  NNYNYSNYNNNNYKQLCYN 105


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYN 9
           + YN S +N+ N ++L YN
Sbjct: 87  NNYNYSNYNNNNYKQLCYN 105


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYN 9
           + YN S +N+ N ++L YN
Sbjct: 87  NNYNYSNYNNNNYKQLCYN 105


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYN 9
           + YN S +N+ N ++L YN
Sbjct: 87  NNYNYSNYNNNNYKQLCYN 105


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYN 9
           + YN S +N+ N ++L YN
Sbjct: 87  NNYNYSNYNNNNYKQLCYN 105


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYN 9
           + YN S +N+ N ++L YN
Sbjct: 87  NNYNYSNYNNNNYKQLCYN 105


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 65  SEYNGSQFNS-YNEQKLLYN 9
           + YN   +N+ YN +KL YN
Sbjct: 307 NNYNYKNYNNNYNSKKLYYN 326


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 65  SEYNGSQFNS-YNEQKLLYN 9
           + YN   +N+ YN +KL YN
Sbjct: 318 NNYNYKNYNNNYNSKKLYYN 337


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYNHR 3
           + YN S +N+YN     YN +
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKK 107


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYNH 6
           + YN + +N+YN     YN+
Sbjct: 94  NNYNNNNYNNYNYNNNNYNN 113


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 65  SEYNGSQFNSYNEQKLLYNH 6
           + YN + +N+YN +KL Y +
Sbjct: 331 NNYNNNNYNNYN-KKLYYKN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,873
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)