Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23j17
(317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.056
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 31 0.056
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.17
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.30
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 0.39
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 0.39
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 0.52
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 0.69
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 0.69
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 27 0.69
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 0.91
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 1.2
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 1.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 1.6
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 1.6
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 26 1.6
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 26 1.6
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 1.6
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 26 1.6
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 2.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 2.8
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 3.7
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 24 4.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 4.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 24 6.4
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 24 6.4
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 24 6.4
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 24 6.4
SPAC664.08c |||traub transciption factor family protein |Schizos... 24 6.4
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 24 6.4
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 23 8.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 23 8.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 23 8.5
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.056
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 16 KESISCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNE--RDKSPXKGEKAEDDLPTK 189
++S S +D+ + S + +S SSE + + DN+ S + E + +D +
Sbjct: 196 EDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS 255
Query: 190 KLRLEMTPETDGNXTXSKENESDSINXRIEXDSINSXSQ 306
+ E+ + S N SDS + DS +S S+
Sbjct: 256 SSSSDSESESSSKDSDSSSNSSDSEDDS-SSDSSDSESE 293
Score = 30.3 bits (65), Expect = 0.074
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +1
Query: 16 KESISCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGE---KAED-DLP 183
++S S +D+ + S + +S SSE + + DN+ S E +ED D
Sbjct: 142 EDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS 201
Query: 184 TKKLRLEMTPETDGNXTXSKENESDSINXRIEXDSINSXS 303
+ E ++G+ + S + S+S + + DS +S S
Sbjct: 202 SSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSS 241
Score = 27.9 bits (59), Expect = 0.39
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 79 EKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKENESD 258
E +S SS D E + ++ S +EDD + E ++ + + S ++SD
Sbjct: 250 EDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSD 309
Query: 259 S 261
S
Sbjct: 310 S 310
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 30.7 bits (66), Expect = 0.056
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +1
Query: 67 SSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAE-DDLPTKKLRLEM 207
S+ I+KRK+++S + ++G N+ S + E+ E DDLP KK+ +M
Sbjct: 47 STKIKKRKDALSKKVKQGIKVNKGKLSFGEDEELENDDLPLKKVEKKM 94
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.17
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 76 IEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKENES 255
+ K+K +SED E +D+E + + E ED + + E E++ E ES
Sbjct: 69 VPKKKAVAASEDSE--SDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEES 126
Query: 256 D 258
D
Sbjct: 127 D 127
Score = 25.8 bits (54), Expect = 1.6
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +1
Query: 40 ETDNGHDVKSSIIEKRKNSVS--SEDQEGNTDNE----RDKSPXKGEKAEDDLPTKKLRL 201
+ D+ + +SS E +S S SE++ + ++E + K+ E +E D + +
Sbjct: 33 QDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEE 92
Query: 202 EMTPETDGNXTXSKENESDS 261
E E D + E+ES+S
Sbjct: 93 ETESEEDSEVSDESESESES 112
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 28.7 bits (61), Expect = 0.23
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 124 TDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXS 240
T+NE D SP + +K +P + +P+TD + S
Sbjct: 40 TENENDLSPERAQKEPVSIPHGRYTWSTSPDTDSSHLPS 78
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.30
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 37 PETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERD 141
P ++N D +S + +RK V+ D+E D+E D
Sbjct: 540 PPSNNLMDALASALNQRKTKVAQSDEEDEDDDEWD 574
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 0.39
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 40 ETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKA 168
ETDN + V++ +EKR + SS ++ + R +P +A
Sbjct: 1359 ETDNKNLVENKAVEKRVEARSSANERKQEERRRKTTPEGNRRA 1401
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 0.39
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 82 KRKNSVSS-EDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKENESD 258
KRK S S E+ E +N R K EK KK ++E TP+ DG E S
Sbjct: 156 KRKVSFSDVEEDEFEPENTRKKLQKPIEKP------KKEKIEATPKIDGGKRLKNEKSSA 209
Query: 259 SIN 267
I+
Sbjct: 210 EIS 212
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 0.52
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 115 EGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKENESDSI 264
E + D+E + +GEK E++ +K + ET+G S E +S+S+
Sbjct: 264 EEDDDDEDEDEELEGEKEEEEEEKEKPEISNYDETEGKVNFSLE-DSESL 312
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 0.69
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 64 KSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAED-DLPTKK 192
KSS +++ S ++++ D + KS K E++ED + P KK
Sbjct: 457 KSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKK 500
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 0.69
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 73 IIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKE-N 249
I +K+K +D+E ++ + S K EK + KK++L+ PE+ + KE N
Sbjct: 195 ITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKK-----KKIKLKDKPESTSSVEKVKEGN 249
Query: 250 ESDSIN 267
SI+
Sbjct: 250 RPASIH 255
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 0.69
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 73 IIEKRKNSVSSEDQEGNTDNERDKSPXKGE 162
I+EK N+++SE ++ ++ E+D+ +GE
Sbjct: 57 ILEKENNAINSEAEKSVSEEEQDEPLVEGE 86
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 0.91
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +1
Query: 22 SISCVPETDNGHDVKSSIIEKRKNSVSS-EDQEGNTDNERDKSPXKGEKAEDDLPTKKLR 198
S+ T + D +S+ K K+ S+ +Q+GN+ + K+P + K ++ L K+ +
Sbjct: 167 SVPSKTSTIDKTDTRSTEKTKGKDIFSNARNQKGNSSRKNKKAPLENHKEKEPLLPKEEK 226
Query: 199 L-EMTPETDGNXTXSKENESDSINXRIEXDS 288
L E + + E +S++ DS
Sbjct: 227 LSEQAKRERDDLKNIMQLEDESVSTTSVHDS 257
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 1.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 79 EKRKNSVSSED-----QEGNTDN-ERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXS 240
+K+K S S +D +G+ ++ E+DK K K DD P K + E
Sbjct: 151 KKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASM 210
Query: 241 KENES 255
E+E+
Sbjct: 211 LESEN 215
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 1.2
Identities = 16/76 (21%), Positives = 30/76 (39%)
Frame = +1
Query: 76 IEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKENES 255
IE+ + + + +E +NE +K AE D P ++ + D KE
Sbjct: 208 IEEENDEILEDSKESKDENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSVKEESG 267
Query: 256 DSINXRIEXDSINSXS 303
++ + +I S S
Sbjct: 268 EASPQSSQQSTITSIS 283
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +1
Query: 64 KSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTP 213
+S+ +++ K ++ + E D++RD + E +DD+ K + ++P
Sbjct: 108 ESNTVKEPKELHTATNTETQFDDDRDSTKLSSEYVKDDIVNKSTKGGVSP 157
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +1
Query: 19 ESISCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDD 177
ES + P + D + + K+++S + + +GN D ++ ++ ED+
Sbjct: 165 ESTAIQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDE 217
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 1.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 28 SCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERDK 144
S PET G + E+ K SVS+E + E++K
Sbjct: 110 SQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEK 148
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 43 TDNGHDVKSSIIEKRKNSVSSEDQE 117
+DN DV++S E S+ SED+E
Sbjct: 328 SDNDEDVENSDSEDGSESIGSEDEE 352
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 79 EKRKNSVSSEDQEGNTDNERDKSP-XKGEKAEDDLPT 186
E KN+ +SE+ G TD + ++P E ++DD P+
Sbjct: 502 EVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPS 538
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 1.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 101 HQKIKRAILTMNGIKVQXKGKKRKTI 178
+Q IKRA+L NG+ VQ K + I
Sbjct: 217 NQIIKRALLLSNGLSVQPKSVEESQI 242
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 KKLRLEMTPETDGNXTXSKENESDSI-NXRIEXDSI 291
+K + E + E GN + SKEN S+++ N +E +++
Sbjct: 22 EKQKQEASYELSGNSSPSKENGSENVDNGEMEDETM 57
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 2.8
Identities = 17/66 (25%), Positives = 23/66 (34%)
Frame = +1
Query: 64 KSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSK 243
K ++ EK K S ED+E N + EDD K + S
Sbjct: 1411 KINLSEKEKEKESIEDEEKNREGSMSPVAKHASDVEDDHDVAKSTAPDFETSSHRPERSS 1470
Query: 244 ENESDS 261
E +S S
Sbjct: 1471 EKKSPS 1476
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 3.7
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +1
Query: 79 EKRKNSVSSEDQEGNTDNERDKSPXKGEK-AEDDLPTKKLRLEMTPETDGNXTXSKENES 255
+K+KN+ SE GN D E +S K E L K LE +T + + +
Sbjct: 45 KKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANKTLSDLVRRIQIQR 104
Query: 256 DSINXRIE---XDSINSXSQ 306
D + E D++N+ +
Sbjct: 105 DEAEQKAEIYNRDALNTKQE 124
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 106 EDQEGNTDNERDKSPXKGEKAEDD 177
ED+E ++DNE ++S AE++
Sbjct: 623 EDEENSSDNEMEESSGSSVTAENE 646
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 24.2 bits (50), Expect = 4.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 160 EKAEDDLPTKKLRLEMTPETDGNXTXSKENESDSINXRIEXD 285
E EDD ++L + T T+GN S E +I D
Sbjct: 745 EVEEDDAEAQELENDNTNTTNGNDNVSSEEALQKPKVKITYD 786
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 28 SCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDN 132
SC PE SI++ K S SE++ G+ D+
Sbjct: 204 SCSPENLKKMPTLESILQDEKTSRLSENKYGDIDD 238
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 16 KESISCVPETDNGHDVKSSII-EKRKNSVSSEDQEGNTDNERD 141
K ++S + +G +++++ E K+S+SSED+E + +D
Sbjct: 124 KPNLSEFADDSDGPASENNVVKEDDKSSISSEDEEEELRSAKD 166
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 23.8 bits (49), Expect = 6.4
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +1
Query: 1 GNXRXKESISCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDDL 180
GN E E+D +D+ + E+ S D+E ++E + + E D
Sbjct: 119 GNFLVDEEDEEEEESDEDYDLSPT--EEDLVETVSGDEESEEESESEDNSASEEDELDSA 176
Query: 181 PTKKLRLE 204
P KK +++
Sbjct: 177 PAKKAQVK 184
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 67 SSIIEKRKNSVSSEDQEGNTDNERDKSPXKGEKAEDD 177
S+ K+K+S + E N D+ D+S AE +
Sbjct: 194 STKTSKKKSSKKNSKSESNQDSSNDRSSTAPSTAESN 230
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 6.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 19 ESISCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNE-RDKSPXKGEKAEDDL 180
+S S E D+ D ++ E +N SSE + +NE D+S EK D L
Sbjct: 88 QSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMDRL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 23.8 bits (49), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 1 GNXRXKESISCVPETDNGHDVKSSIIEKRKNSVSS 105
GN R SCV TD G D S+ ++K S S+
Sbjct: 113 GNARKVVGCSCVAVTDYGED--SAALQKLLESFSA 145
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 124 TDNERDKSPXKGEKAEDDLPTKKL 195
+ +R S + E E++LPTKKL
Sbjct: 396 SSRKRKASDRQRESRENELPTKKL 419
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 DNGHDVKSSIIEKRKNSVSSEDQEGNTDNER--DKSPXKGEKAEDD 177
+ G D + ++ N+ ED++ +NE D + + E EDD
Sbjct: 75 NKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDD 120
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 91 NSVSSEDQEGNTDNERDKSPXKGEKAEDD 177
NS+ + + TDN++DK GE D+
Sbjct: 14 NSLKAFPVDIATDNQKDKHENVGENVSDE 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.295 0.118 0.307
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,947
Number of Sequences: 5004
Number of extensions: 13344
Number of successful extensions: 58
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.8 bits)
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