Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j17
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.39 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   1.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   6.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.39
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 88  KNSVSSEDQEGNTDNERDKSPXKGEKAEDDLPTKKLRLEMTPETDGNXTXSKENESDS 261
           KN+  S   EGN  +E + SP      ED++  + L  E+T    GN   + E+ SDS
Sbjct: 216 KNNHVSSKVEGNGVHE-ENSPL-----EDNIKCEPL--ELTGGNSGNAAGNNEDSSDS 265


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +1

Query: 55  HDVKSSIIEKR----KNSVSSEDQEGNTDNERD 141
           H+ K  ++E+R    +NS S E ++ +  NER+
Sbjct: 22  HNEKEKLLEERTNRKRNSRSREREQNSYKNERE 54


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +1

Query: 55  HDVKSSIIEKR----KNSVSSEDQEGNTDNERD 141
           H+ K  ++E+R    +NS S E ++ +  NER+
Sbjct: 22  HNEKEKLLEERTNRKRNSRSREREQNSYKNERE 54


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 93  QCVIRRSRG 119
           QC++RRS G
Sbjct: 398 QCIVRRSEG 406


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 93  QCVIRRSRG 119
           QC++RRS G
Sbjct: 398 QCIVRRSEG 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.295    0.118    0.307 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,024
Number of Sequences: 438
Number of extensions: 712
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.3 bits)