Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j14
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.24 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    28   0.55 
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   0.97 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   3.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   6.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   9.0  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 85  SQHDYDRDQIKRELNSLRRNVHDMCTR-SGTSFDCNKFLRSDDMTPV 222
           S+ D D ++++ +L +L      +  R S ++FD +KF+R++D   V
Sbjct: 450 SERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKFIRTEDKDTV 496


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
 Frame = +1

Query: 19   CNFIQ*YIMYSTSKINNARVVASQHDYDRDQIKRELNSL--RRNVHDMCTRSGTSFDCNK 192
            CN    Y++ STSK+ N  +      YD  +++   N+L     + D+  +    +   K
Sbjct: 796  CNNGTKYVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGK 855

Query: 193  FLRSDDMTPVVTTITPKRTADYKITEYVSDVKTIKPSNRPLVESGPLVQEAAKYGRC 363
            F  S  ++PV  ++       YK  + +     + PSN+ L     LV+ + K  +C
Sbjct: 856  FPDSVKLSPVQQSVLLALGLQYKTIDTLEKEFNL-PSNQLL---AMLVKLSKKIMKC 908


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 202 SDDMTPVVTTITPKRTADYKIT-EYVSDVKTIKPSNRPLVESGPLVQEAAKYGRCTV*RV 378
           SD   P + T++    A   +  E   ++K I PSN+P  +  PL++  A     TV + 
Sbjct: 396 SDANNPTIGTVSGLEAAMQDVLKEKKQEMKNIDPSNQPSDQFIPLLKTCALCNLSTVNQT 455

Query: 379 ES 384
           E+
Sbjct: 456 ET 457


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 169 GTSFDCNKFLRSDDMTPVVTTITPKRTADYKIT 267
           G +FD  K + S+++  V+  I P+ T  YK++
Sbjct: 395 GCNFDLYKKIVSNNVESVLVEIIPRLTEKYKVS 427


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +1

Query: 40  IMYSTSKINN---ARVVASQHDYDRD--QIKRELNSLRRNVHDMCTRSGTSFDCNKFLRS 204
           I  S+ K+ N   + ++  Q D      Q+ +EL SL    H   T   +  +    +R+
Sbjct: 704 ISMSSQKLGNGISSELIELQKDMKESYRQLVQELRSLYNLQH---THEESQKELMYGVRN 760

Query: 205 DDMTPVVTTITPKRTADYKITEYVSDVKT 291
           D    V T  T    AD  +++Y+SD K+
Sbjct: 761 DIDALVKTCTTSLNDADIILSDYISDQKS 789


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 52   TSKINNARVVASQHDYDRDQIKRELNSLRRNVHDMCTRSGTSFD 183
            T+++   R        D+D + RE  +L R +H++  +    FD
Sbjct: 1831 TAQLQEVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFD 1874


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = +1

Query: 55   SKINNARVVASQHDYDRDQIKRELNSLRRNVHDMCTRSGTSFDCNKFLRSDDMTPVVTTI 234
            S+ N  +   S  + D    K EL SLR N   + +      +  K L+        T +
Sbjct: 936  SEQNELKEKLSLEEKDLLDTKGELESLRENNATVLSEKAEFNEQCKSLQE-------TIV 988

Query: 235  TPKRTADYKITEYVSDVKT 291
            T     D K+T+Y+SD KT
Sbjct: 989  TKDAELD-KLTKYISDYKT 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,536
Number of Sequences: 5004
Number of extensions: 30645
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)