Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23j14
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0310 + 7315185-7316820,7318332-7318879 30 0.95
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 29 2.2
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688 28 2.9
09_01_0051 - 862286-864670 27 6.7
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 6.7
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 27 6.7
01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343... 27 6.7
11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746 27 8.8
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 8.8
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 8.8
>03_02_0310 + 7315185-7316820,7318332-7318879
Length = 727
Score = 29.9 bits (64), Expect = 0.95
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 199 RSDDMTPVVT-TITPKRTA-DYKITEYVSDVKTIKPSNRPL 315
+S DM + T TITP +++ ++K T + D +KPS +PL
Sbjct: 568 QSTDMRSLQTPTITPPKSSFNFKTTTSILDTDALKPSPKPL 608
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 184 CNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKT 291
C FLRS ++ PV+ + +++ D I+EY S + T
Sbjct: 1221 CRLFLRSSELLPVIVHL--RQSPDPAISEYASAIAT 1254
>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
Length = 241
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 247 FFWA*SLSLRGSCHRCVETCYNQNSCLN-ACTYRARYVASYLV 122
F W S LR S VE C NQ CL A +++ V YL+
Sbjct: 188 FCWL-SCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLI 229
>09_01_0051 - 862286-864670
Length = 794
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 130 SLRRNVHDMCTRSGTSFDCNKFLRSDDMTPVVTTITPKRT 249
SLR+ VHDMC +SG K LRS + VV + T
Sbjct: 502 SLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 181 DCNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKTIKPSNR 309
D LRS V+ +++ KRT +T + KT P+N+
Sbjct: 117 DNTSTLRSFSFRKVINSLSAKRTHSLPVTPIATSDKTSSPANQ 159
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 43 MYSTSKINNARVVASQHDYDRDQIKRELNSLRRNVHDMCTRSGTSFDCNKFLRSDD 210
+YS S+ N V D D + I +++RR +H RS +S K +DD
Sbjct: 185 LYSLSQDN----VVDNDDKDNNNINTSTSNMRRLIHQQIRRSSSSESDKKKEDADD 236
>01_01_0464 -
3431298-3431315,3431586-3433339,3433340-3433589,
3433716-3434041,3434297-3434618
Length = 889
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 309 SIGWLNSFNVTDVLGNFVVGS 247
SIGWL S N ++ G +VG+
Sbjct: 250 SIGWLKSLNSLEISGTTIVGT 270
>11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746
Length = 272
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 223 VTTITPKRTADYKITEYVSDVKTIKPSNRPLVES-GP 330
++ + P+R + Y++ EY+ D+ T + + RP V S GP
Sbjct: 29 ISMVRPQRHSIYRVPEYIKDM-TNRDAYRPQVVSLGP 64
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 49 STSKINNARVVASQHDYDRDQIKRELNSLRRNVHD 153
STS+IN D +++K E+ SL++++HD
Sbjct: 300 STSQINEVGTSDVNGISDVEKVKEEMASLKKSLHD 334
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 384 GLHTLYGASAIFRGFLHQRSRFD*RSIGWLNSFNVTDVLGNFVVGS 247
G+HT +G +A +Q F + L S +V +GNF + S
Sbjct: 224 GVHTFFGKAAHLVDSTNQVGHFQKARLRSLTSVHVLTAIGNFCICS 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,935
Number of Sequences: 37544
Number of extensions: 184670
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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