Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j14
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein.     30   3.1  
AL831828-1|CAD38541.1|  206|Homo sapiens hypothetical protein pr...    29   7.1  

>AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein.
          Length = 1956

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = +1

Query: 55   SKIN-NARVVA-SQHDYDRDQIKRELNSLRRNVHDMCTRSGTSFDCNKFLRSDDM-TPVV 225
            SKI   ARV   S+   + ++I  EL +  R + D C      F+  K +  DD+ T +V
Sbjct: 933  SKIQLEARVKELSERVEEEEEINSELTARGRKLEDEC------FELKKEI--DDLETMLV 984

Query: 226  TTITPKRTADYKITEYVSDVKTIKPSNRPLVESGPLVQEA 345
             +   KRT ++K+     +V+ +      L  +  +VQEA
Sbjct: 985  KSEKEKRTTEHKVKNLTEEVEFLNEDISKLNRAAKVVQEA 1024


>AL831828-1|CAD38541.1|  206|Homo sapiens hypothetical protein
           protein.
          Length = 206

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 191 SFYAAMT*PP**QRSRPKELPTTKLPSTSVTLKLLSHPIDR*SNRDRWCKKPRNMADAPY 370
           S +  +T PP   ++   +LP          L LL+HP+   S+   W + P+    A  
Sbjct: 42  SSHQLLTAPPSAMKAPCPQLPCPPASHPLCLLWLLAHPL---SHHLGWPRVPQPQHSAQS 98

Query: 371 NVWSPLISASC 403
             WS L++ SC
Sbjct: 99  LAWSHLMTRSC 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,192,691
Number of Sequences: 237096
Number of extensions: 999826
Number of successful extensions: 2350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)