Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j14
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-6|CAB04378.1|  106|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    27   8.0  
U49956-2|AAO38616.1|  136|Caenorhabditis elegans Dauer or aging ...    27   8.0  
AL117202-8|CAB57891.1|  547|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z81537-6|CAB04378.1|  106|Caenorhabditis elegans Hypothetical
           protein F41D3.7 protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 190 KFLRSDDMTPVVTTITPKRTADYKITEYVSDV 285
           K L   D+T  VTT+T +  AD KI   V D+
Sbjct: 59  KLLEGIDVTEAVTTVTSEVKADLKIAIVVDDL 90


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 377 TRYTVHLPYFAASCTSGPDSTNGRLDGLIVLTSLTYSVIL 258
           T Y VH P +A    S P+S +    GLIV  S+  SV+L
Sbjct: 299 TLYLVHWPIYAYCKLSYPESISVLTTGLIV--SILMSVVL 336


>U49956-2|AAO38616.1|  136|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 2 protein.
          Length = 136

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 130 SLRRNVHDMCTRSGTSFDCNKFLRSDDMTP 219
           SLR N  D C ++G S +C K+  +    P
Sbjct: 74  SLRHNHEDCCKKAGVSGECLKYCTAHKGAP 103


>AL117202-8|CAB57891.1|  547|Caenorhabditis elegans Hypothetical
           protein Y47D3A.11 protein.
          Length = 547

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 121 ELNSLRRNVHDMCTRSGTSFDCNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKTIKP 300
           E  + +    ++C +   SF   +  +  D T  V  +TP  +A Y +  Y    + +  
Sbjct: 222 EAEACKSRCQELCDKFEKSFYNERLTKLMDQTKDVRAMTPHHSATYPVLLYALFYRYMLD 281

Query: 301 SNR-PLVESGPLVQE 342
           + R P +    L+Q+
Sbjct: 282 NIRNPAIMKAKLIQK 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,404,937
Number of Sequences: 27780
Number of extensions: 178082
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)