Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23j13
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0059 - 3716345-3716674 28 1.2
12_02_0987 - 25060266-25060461,25061124-25063351 27 2.8
01_05_0382 - 21661973-21662124,21662367-21662659,21662994-216631... 26 3.7
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 26 3.7
07_03_1213 + 24921603-24921746,24921923-24922786 26 5.0
02_01_0323 - 2201294-2202337 25 6.5
11_06_0424 - 23357012-23357579,23358172-23358211,23358791-233589... 25 8.7
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 25 8.7
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 25 8.7
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 25 8.7
02_05_0816 + 31986370-31987662 25 8.7
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 25 8.7
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 25 8.7
>09_02_0059 - 3716345-3716674
Length = 109
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 205 ESAVSNKYMAPFMTHRAPTARPTCFSAKT 119
E V+ ++ P +T PT +PT F+A T
Sbjct: 4 EGRVNRHHLPPLVTAAGPTLQPTTFTAAT 32
>12_02_0987 - 25060266-25060461,25061124-25063351
Length = 807
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 51 WIAVGAVALHYWGGYQGEHQFQFVFAEKQV 140
W AV V + +W G G H FQ A V
Sbjct: 749 WWAVANVGMFFWIGSSGLHGFQHFIASYAV 778
>01_05_0382 -
21661973-21662124,21662367-21662659,21662994-21663178,
21663268-21664023,21664118-21664390
Length = 552
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2
Query: 143 PGRWSSMRHKWSHIFIGHGTFCHTFHKG 226
PG W H + H+F G+ T +G
Sbjct: 100 PGMWDVGEHAFHHLFDGYATLVRVSFRG 127
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 90 GYQGEHQFQFVFAEKQV--GLAVGALCVINGAIYL 188
G+QG+ F+FV E+QV GL L + G + L
Sbjct: 218 GHQGDEPFEFVVDEEQVSDGLEEAVLTMWEGEVSL 252
>07_03_1213 + 24921603-24921746,24921923-24922786
Length = 335
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 216 NV*QKVPCPINIWLHL*RIELQRPGQPVSQRRQTGTGARPGILPSSVMP 70
NV KV C IN W L L P + +++ T G++ S MP
Sbjct: 168 NVINKVNCKINFWGKL--DMLSEPVRVAAEKLMVSTAENKGLVFSVCMP 214
>02_01_0323 - 2201294-2202337
Length = 347
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 152 WSSMRHKWSHIFIGHGTFCH 211
WS++ +W+ F+G +CH
Sbjct: 198 WSTVATRWTLPFVGLAEYCH 217
>11_06_0424 -
23357012-23357579,23358172-23358211,23358791-23358969,
23359570-23359931
Length = 382
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 120 VFAEKQVGLAVGALCVINGAIYLLDTALSVIHFTKEM*F--YYYFLI 254
VF + L GALC++ ++ + L H T YY++L+
Sbjct: 190 VFPPLYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYLL 236
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 132 KQVGLAVGALCVINGAIYLLDTALSVIH 215
+ V LA+G LC+ N + ++DT + H
Sbjct: 717 RAVPLALGLLCISNPKVNVMDTMSRLSH 744
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 69 VALHYWGGYQGEHQFQFVFAEKQVGLAVG 155
+A + G G QF+ + + +VGL +G
Sbjct: 234 IARGFGSGQSGSEQFEMLVPDNKVGLIIG 262
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 132 KQVGLAVGALCVINGAIYLLDTALSVIH 215
+ V LA+G LC+ N + ++DT + H
Sbjct: 680 RAVPLALGLLCISNPKVNVMDTMSRLSH 707
>02_05_0816 + 31986370-31987662
Length = 430
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 36 VGVFLWIAVGAVALHYWGGY 95
VGVFL+IA+ + L + GY
Sbjct: 60 VGVFLFIAISTIYLRHCTGY 79
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 132 KQVGLAVGALCVINGAIYLLDTALSVIH 215
+ V LA+G LC+ N + ++DT + H
Sbjct: 677 RAVPLALGILCISNPKVNVMDTLSRLSH 704
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 84 WGGYQGEHQFQFVFAEKQVGLAVGALC 164
W GYQGE++ F+ +K++ + LC
Sbjct: 355 WQGYQGENK-SFLVCKKKMATSPDLLC 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,302
Number of Sequences: 37544
Number of extensions: 148855
Number of successful extensions: 454
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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