Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j13
         (276 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ987819-1|ABJ97609.1|  181|Homo sapiens immunoglobulin heavy ch...    28   4.6  
AY040878-1|AAK77940.1|  255|Homo sapiens F-box protein FBG3 prot...    27   8.0  
AL031731-3|CAI20211.1|  255|Homo sapiens F-box protein 44 protein.     27   8.0  

>DQ987819-1|ABJ97609.1|  181|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 156 LQRPGQPVSQRRQTGTGARPGILPSSVMP 70
           +Q PGQ     R+ G+G RP  LPS + P
Sbjct: 142 VQAPGQESGVCRRPGSGLRPHQLPSRLCP 170


>AY040878-1|AAK77940.1|  255|Homo sapiens F-box protein FBG3
           protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 45  FLWIAVGAVALHYWGGYQG 101
           ++W   G V  HYW G+ G
Sbjct: 222 YIWFQHGGVDTHYWAGWYG 240


>AL031731-3|CAI20211.1|  255|Homo sapiens F-box protein 44 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 45  FLWIAVGAVALHYWGGYQG 101
           ++W   G V  HYW G+ G
Sbjct: 222 YIWFQHGGVDTHYWAGWYG 240


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,877,475
Number of Sequences: 237096
Number of extensions: 843923
Number of successful extensions: 2047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)