Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23j13
(276 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 0.62
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 28 0.82
Z71185-14|CAA94912.1| 591|Caenorhabditis elegans Hypothetical p... 27 1.4
AL021475-4|CAA16315.1| 591|Caenorhabditis elegans Hypothetical ... 27 1.4
U41109-8|AAB37044.1| 344|Caenorhabditis elegans Hypothetical pr... 27 1.9
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 1.9
AF537097-1|AAN60468.1| 110|Caenorhabditis elegans PHF-5 protein. 26 3.3
AF537096-1|AAN60467.1| 110|Caenorhabditis elegans PHF-5 protein. 26 3.3
AC026301-14|AAP13738.1| 110|Caenorhabditis elegans Phd finger f... 26 3.3
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 26 4.4
Z92813-1|CAB07286.1| 393|Caenorhabditis elegans Hypothetical pr... 25 7.7
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.7 bits (61), Expect = 0.62
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 147 PGQPVSQRRQTGTGARP-GILPSSVMPQRPP 58
PG P Q Q GTGA P G+ P Q PP
Sbjct: 121 PGYPQQQPYQIGTGATPAGMYPPPPTGQYPP 151
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 28.3 bits (60), Expect = 0.82
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 147 PGQPVSQRRQT-GTGARPGILPSSVMPQRPP 58
P QP QRR+T +G R G P MPQ+ P
Sbjct: 837 PPQPPQQRRRTESSGYRGGPPPPPPMPQQQP 867
>Z71185-14|CAA94912.1| 591|Caenorhabditis elegans Hypothetical
protein Y32F6B.2 protein.
Length = 591
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 3 PSALSEIVMNFVGVFLWIAVGAVALHYWGGYQGE 104
PS + F+G LWIA + + +W GE
Sbjct: 416 PSLRKFFAITFIGAILWIAAYSYLMVWWANTIGE 449
>AL021475-4|CAA16315.1| 591|Caenorhabditis elegans Hypothetical
protein Y32F6B.2 protein.
Length = 591
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 3 PSALSEIVMNFVGVFLWIAVGAVALHYWGGYQGE 104
PS + F+G LWIA + + +W GE
Sbjct: 416 PSLRKFFAITFIGAILWIAAYSYLMVWWANTIGE 449
>U41109-8|AAB37044.1| 344|Caenorhabditis elegans Hypothetical
protein F52E1.8 protein.
Length = 344
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 89 RIPGRAPVPVCLR*ETGWPGRWSSMRHK--WSHIFIG 193
R PG P P ET WP W + +K W + +G
Sbjct: 10 RAPGDLPYPKDKYNETFWPRGWDQLTNKGIWQAVELG 46
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 65 RCGITLLGRIPGRAPVPVCLR*ETGWPGRWSSMRHKWSHIFI 190
R GI L A VPV E WP RW + + H+ I
Sbjct: 922 RHGILGLLEAVNEAAVPVVFTCEQEWPRRWGQVELRRPHLEI 963
>AF537097-1|AAN60468.1| 110|Caenorhabditis elegans PHF-5 protein.
Length = 110
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 102 EHQFQFVFAEKQVGLAVGALC 164
+H +F KQ G+A+G LC
Sbjct: 3 KHHPDLIFCRKQPGIAIGRLC 23
>AF537096-1|AAN60467.1| 110|Caenorhabditis elegans PHF-5 protein.
Length = 110
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 102 EHQFQFVFAEKQVGLAVGALC 164
+H +F KQ G+A+G LC
Sbjct: 3 KHHPDLIFCRKQPGIAIGRLC 23
>AC026301-14|AAP13738.1| 110|Caenorhabditis elegans Phd finger
family protein 5 protein.
Length = 110
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 102 EHQFQFVFAEKQVGLAVGALC 164
+H +F KQ G+A+G LC
Sbjct: 3 KHHPDLIFCRKQPGIAIGRLC 23
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 99 GEHQFQFVFAEKQVGLAVGALCVINGAIYLLDTALS 206
G H + FA K LAV A G +Y +DT+LS
Sbjct: 512 GVHFNEVQFAPKGGWLAVLAKVSAGGNVYFIDTSLS 547
>Z92813-1|CAB07286.1| 393|Caenorhabditis elegans Hypothetical
protein T28A8.1 protein.
Length = 393
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 51 WIAVGAVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYLLDTALSVI 212
+I GAV L W G+ F F F + G + + Y+LD +I
Sbjct: 230 YITFGAVVLSMWEGWDFFSGFYFSFI-TMTTVGFGDIVPLKREYYILDLCYIII 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,577,611
Number of Sequences: 27780
Number of extensions: 124681
Number of successful extensions: 302
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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