Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j13
         (276 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   1.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   1.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   2.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   8.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   8.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   8.6  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 156 LQRPGQPVSQRRQTGTGARPGILPSSVMPQ-RPP 58
           L  P +P   RR+    A PG      +PQ RPP
Sbjct: 22  LDPPTRPTRLRREAKPEAEPGNNRPVYIPQPRPP 55


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 156 LQRPGQPVSQRRQTGTGARPGILPSSVMPQ-RPP 58
           L  P +P   RR+    A PG      +PQ RPP
Sbjct: 23  LDPPTRPTRLRREAEPEAEPGNNRPVYIPQPRPP 56


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 156 LQRPGQPVSQRRQTGTGARPGILPSSVMPQ-RPP 58
           L  P +P   RR+    A PG      +PQ RPP
Sbjct: 23  LDPPTRPARLRREAKPEAEPGNNRPIYIPQPRPP 56


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 68  SAHRNPEEHSDEVHHDLRQS 9
           S ++N  +H+D+ HH  + +
Sbjct: 438 SDNQNNNQHNDQAHHSSKSN 457


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 159 ELQRPGQPVSQRRQTGTGARPGILPSSVMPQRPP 58
           ++  P  P S    TG+      L +++M Q PP
Sbjct: 349 QMASPEPPKSSESSTGSSIPKLNLSTALMSQPPP 382


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 211 MTESAVSNKYMAPFMT 164
           + E AV N YM P  T
Sbjct: 291 LMEFAVVNNYMGPVAT 306


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 141 QPVSQRRQTGTGARPG 94
           QPV+  RQ  +  +PG
Sbjct: 259 QPVTVNRQLNSDVQPG 274


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 70  TAPTAIQRNTPT 35
           TAP  I++N PT
Sbjct: 221 TAPEVIKQNRPT 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,665
Number of Sequences: 438
Number of extensions: 1757
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)