Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j06
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    56   3e-09
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   4.0  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   7.0  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    24   9.3  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    24   9.3  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +1

Query: 1   HVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISIY 153
           H+I+GT+ LL+        H +  HH GFE    Y HF DVV LFLY++IY
Sbjct: 219 HIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 391 ILIRDIDFGSNPHSNGEHFSRSIN 320
           + I   DFG NP    EH+ +S++
Sbjct: 678 LFIESKDFGDNPLDTFEHYKQSVD 701


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 52  NNHFSKNHHFG 84
           NNHF+K HH G
Sbjct: 162 NNHFTKTHHQG 172


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 4   VIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 114
           +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 135 IFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 125 YDYFFTFLFIDEEINYLYNIY 187
           Y Y   FL  DE++  LYN Y
Sbjct: 326 YQYLSFFLDDDEKLKQLYNTY 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,188
Number of Sequences: 5004
Number of extensions: 13413
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)