Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23j02
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   7.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   7.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 304 KHTLCRGIVTIYFIAI 351
           K+  C GI ++Y IAI
Sbjct: 115 KNQNCSGITSVYRIAI 130


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 316 CRGIVTIYFIAIIK 357
           C GIV+ Y IAI K
Sbjct: 122 CSGIVSAYKIAIDK 135


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 316 CRGIVTIYFIAIIK 357
           C GIV+ Y IAI K
Sbjct: 122 CSGIVSAYKIAIDK 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,591
Number of Sequences: 438
Number of extensions: 749
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)